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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38349.1
DDBJ      :             lipopolysaccharide biosynthesis
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  80/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:688 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   186->266 3di2C PDBj 2e-06 11.1 %
:RPS:PDB   511->680 3cioA PDBj 2e-06 14.7 %
:RPS:SCOP  512->674 1g3qA  c.37.1.10 * 9e-05 18.5 %
:HMM:SCOP  511->679 1ionA_ c.37.1.10 * 2.7e-10 23.2 %
:RPS:PFM   19->116 PF02706 * Wzz 2e-08 31.6 %
:RPS:PFM   232->306 PF02650 * HTH_WhiA 1e-04 40.3 %
:HMM:PFM   18->184 PF02706 * Wzz 3.3e-17 24.3 144/152  
:HMM:PFM   320->396 PF07295 * DUF1451 0.00038 23.0 74/146  
:HMM:PFM   226->265 PF10819 * DUF2564 0.00015 27.5 40/79  
:BLT:SWISS 49->430 EXOP_RHIME 6e-27 32.3 %
:BLT:SWISS 515->679 EPSB1_RALSO 7e-06 25.9 %
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38349.1 GT:GENE ABE38349.1 GT:PRODUCT lipopolysaccharide biosynthesis GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 1262993..1265059 GB:FROM 1262993 GB:TO 1265059 GB:DIRECTION + GB:PRODUCT lipopolysaccharide biosynthesis GB:PROTEIN_ID ABE38349.1 GB:DB_XREF GI:91682047 InterPro:IPR003856 LENGTH 688 SQ:AASEQ MSPQPSSPDAPTDRTSDGLDFRNVLGILARRKNWVIGVPLALCAMVAAYLLIAQPAYTGMAQVFVDPRDQYTPKDDPLQNSVPGDGLLLVESQLKIITSNEVLNRVIEQMDLQNDPEFNGQRFGIGRFVKSLIGLGKTEDRALTTLRNLRLKVATRRIDRSFVIDILASADTAPRAAALANAVATSYLEEQAGANSAFQRRTSEAISAQLGKLRQEVKRGEEAVAAFKAANNLVGARSRLVSEQQLDEANTQLTNARTRLADAQARVRLIETVEQGNAGLDSLPEAMQSAAIVQLRGRAVDASREEAQLAQINGPNHPALQAARAQVRDVQAAIQRELKTIARSVRNTEASERTNVQNLQANFDALKAQSQANDKLMVPLRELERKAESSRIVYESFLAKAKTAEERQGIDTTNIRLISRATAPENKSWPPTLIMLAAAIFAGLTIGIALALARDYFERPVRDPEPDAVAVSDAPSLAPADPAPVFRPAVKAQSHAGRLSALSEELLAAPKGHTVVLVQVQRGAWLDDVALQLARTVIANQMDVMLVDADLARHQTTSRLGYDDAPGLRDVMAGDAAIGDVVRLHKPTAMRVVPVGLAAVGSRDPRARQALSLAFQQLRVFDRVIVDGGEMGSTASEFGMYYMADEVVFLAQAPGGKSDDAAILVDLLQHRQIKARVVFVEPDVSVAA GT:EXON 1|1-688:0| BL:SWS:NREP 2 BL:SWS:REP 49->430|EXOP_RHIME|6e-27|32.3|372/786| BL:SWS:REP 515->679|EPSB1_RALSO|7e-06|25.9|162/751| COIL:NAA 35 COIL:NSEG 1 COIL:REGION 237->271| TM:NTM 2 TM:REGION 39->61| TM:REGION 432->454| SEG 168->184|asadtapraaalanava| SEG 319->336|alqaaraqvrdvqaaiqr| SEG 436->453|laaaifagltigialala| SEG 467->485|davavsdapslapadpapv| SEG 499->509|lsalseellaa| RP:PDB:NREP 2 RP:PDB:REP 186->266|3di2C|2e-06|11.1|81/110| RP:PDB:REP 511->680|3cioA|2e-06|14.7|170/255| RP:PFM:NREP 2 RP:PFM:REP 19->116|PF02706|2e-08|31.6|95/160|Wzz| RP:PFM:REP 232->306|PF02650|1e-04|40.3|72/190|HTH_WhiA| HM:PFM:NREP 3 HM:PFM:REP 18->184|PF02706|3.3e-17|24.3|144/152|Wzz| HM:PFM:REP 320->396|PF07295|0.00038|23.0|74/146|DUF1451| HM:PFM:REP 226->265|PF10819|0.00015|27.5|40/79|DUF2564| GO:PFM:NREP 2 GO:PFM GO:0009103|"GO:lipopolysaccharide biosynthetic process"|PF02706|IPR003856| GO:PFM GO:0016020|"GO:membrane"|PF02706|IPR003856| RP:SCP:NREP 1 RP:SCP:REP 512->674|1g3qA|9e-05|18.5|162/237|c.37.1.10| HM:SCP:REP 511->679|1ionA_|2.7e-10|23.2|168/0|c.37.1.10|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 157 OP:NHOMOORG 80 OP:PATTERN -------------------------------------------------------------------- 13--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111-----413522123222122222221224-22112315442-355323233333-111-----1--------------22--121--------------------------------2-----------------------------------------------1---------------------1----1-1------------------1-----11--------------------------------1-----1-----------------------------------------------------------------------------------------------------------------------------------1-----------------------------------1------------------------11111---------------------1-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 252 STR:RPRED 36.6 SQ:SECSTR #########################################################################################################################################################################################HHHHTTccccTTccccccHHHHHccccHHHHHHHHHHHHHTTcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHH###################################################################################################################################################################################################################################################ccccEEEEEEccccccHHHHHHHHHHHHHHTTccEEEEEccTTTccHHHHTTccccccHHHHHTTcccHHHHcEEETTTTEEEEccccccccHHHHHTcHHHHHHHHHHHHccEEEEEcccTTTcTHHHHHGGGccEEEEEEETTTccTTHHHHHHHHHHHTTcccccEEE######## DISOP:02AL 1-18,71-87,236-245,270-285,355-375,405-412,479-500,604-605,688-689| PSIPRED ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHccEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHccccccccHHHHHHccccHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHcccccEEEcccccccc //