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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38369.1
DDBJ      :             nuclease (SNase-like)
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  40/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
b.40.1g.48.1
:246 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   34->139 3d6cA PDBj 2e-14 25.0 %
:RPS:PDB   189->241 1adnA PDBj 4e-07 24.5 %
:RPS:SCOP  34->139 1a2tA  b.40.1.1 * 7e-14 25.5 %
:RPS:SCOP  189->241 1adnA  g.48.1.1 * 2e-07 24.5 %
:HMM:SCOP  9->148 1joqA_ b.40.1.1 * 2.7e-16 30.6 %
:RPS:PFM   39->141 PF00565 * SNase 4e-07 40.2 %
:HMM:PFM   39->140 PF00565 * SNase 2.2e-10 31.6 98/108  
:HMM:PFM   203->241 PF02805 * Ada_Zn_binding 3e-05 35.9 39/66  
:BLT:SWISS 30->140 EXOI_RHIME 3e-07 30.3 %
:BLT:SWISS 185->235 YTTA_BACSU 3e-04 45.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38369.1 GT:GENE ABE38369.1 GT:PRODUCT nuclease (SNase-like) GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 1286377..1287117 GB:FROM 1286377 GB:TO 1287117 GB:DIRECTION + GB:PRODUCT nuclease (SNase-like) GB:PROTEIN_ID ABE38369.1 GB:DB_XREF GI:91682067 InterPro:IPR006021 LENGTH 246 SQ:AASEQ MVAVIFVLAFLVGAPAFAVAADAIVRDAATLQLGGVTYRLEGIDAPELDQRCISEFADPSTCGIEARDAAVKLIGGRAVACRDLGPDPVFKGRRIGACTIAGDNLSQQLVKAGLALSADPKGRFAADEAKAKADRVALWKGCFVAPQSFRQWNKTAPLLGAACRDDRQAEMLDVMFPDMPPMPDGCNIKGKLAKRARITGNVGVYQLQGCPSYASLAKPNRWFCSEDDARAAGFRKAYNCRISAKR GT:EXON 1|1-246:0| BL:SWS:NREP 2 BL:SWS:REP 30->140|EXOI_RHIME|3e-07|30.3|109/191| BL:SWS:REP 185->235|YTTA_BACSU|3e-04|45.2|42/248| TM:NTM 1 TM:REGION 8->30| SEG 7->29|vlaflvgapafavaadaivrdaa| SEG 171->184|mldvmfpdmppmpd| RP:PDB:NREP 2 RP:PDB:REP 34->139|3d6cA|2e-14|25.0|100/135| RP:PDB:REP 189->241|1adnA|4e-07|24.5|53/92| RP:PFM:NREP 1 RP:PFM:REP 39->141|PF00565|4e-07|40.2|97/107|SNase| HM:PFM:NREP 2 HM:PFM:REP 39->140|PF00565|2.2e-10|31.6|98/108|SNase| HM:PFM:REP 203->241|PF02805|3e-05|35.9|39/66|Ada_Zn_binding| GO:PFM:NREP 2 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00565|IPR006021| GO:PFM GO:0016788|"GO:hydrolase activity, acting on ester bonds"|PF00565|IPR006021| RP:SCP:NREP 2 RP:SCP:REP 34->139|1a2tA|7e-14|25.5|102/135|b.40.1.1| RP:SCP:REP 189->241|1adnA|2e-07|24.5|53/92|g.48.1.1| HM:SCP:REP 9->148|1joqA_|2.7e-16|30.6|134/0|b.40.1.1|1/1|Staphylococcal nuclease| OP:NHOMO 62 OP:NHOMOORG 43 OP:PATTERN -------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------3333--32223-111-11111--11-2--1112---1111-111-11121------1--2-----------------------------------------------1---1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11------1-------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 162 STR:RPRED 65.9 SQ:SECSTR #################################EEEEEEETTEEccccccTTTcccTcccTTHHHHHHHHHHHHHccccEEccccccTTTTccEEEEEEETTEEHHHHHHHTTccEEcTTHHHHHHHHHHHHHTTcGGGGcc##############################################HHHHHccccccTTTTEEEcccccccccccccEEEEccHHHHHHHTccEEcccc##### DISOP:02AL 150-166,243-247| PSIPRED ccHHHHHHHHHHcccHHHHHHHHHEEcccEEEEccEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccccccEEEEEEEccEEHHHHHHHcccEEEEcccccHHHHHHHHHHccccccccccccHHHHHHccccccccccccccccHHHHHHHHcccccccccccEEEEEEccEEEEccccEEEEccccccHHHcccccEEEccHHHHHHcccccccccEEEccc //