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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38511.1
DDBJ      :             Pseudouridine synthase, Rsu
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  867/915 : Eukaryota  68/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:795 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   477->679 3dh3C PDBj 1e-19 32.1 %
:RPS:PDB   475->704 3dh3A PDBj 2e-28 23.1 %
:RPS:SCOP  477->530 1vioA2  d.66.1.5 * 9e-14 24.1 %
:RPS:SCOP  536->687 1kskA4  d.265.1.3 * 7e-30 30.9 %
:HMM:SCOP  451->576 1fjgD_ d.66.1.2 * 6.6e-27 36.6 %
:HMM:SCOP  533->707 1vioA1 d.265.1.3 * 1e-35 32.6 %
:RPS:PFM   536->613 PF00849 * PseudoU_synth_2 7e-09 47.4 %
:HMM:PFM   477->522 PF01479 * S4 4.4e-14 47.8 46/48  
:HMM:PFM   537->669 PF00849 * PseudoU_synth_2 1.5e-11 26.3 133/164  
:BLT:SWISS 214->307 IF2_DESRM 9e-16 55.1 %
:BLT:SWISS 364->434 Y955_SYNY3 3e-04 47.3 %
:BLT:SWISS 477->704 Y321_RICBR 1e-54 46.9 %
:PROS 574->588|PS01149|PSI_RSU
:REPEAT 5|137->159|212->233|234->255|256->277|278->300
:REPEAT 2|351->393|394->440
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38511.1 GT:GENE ABE38511.1 GT:PRODUCT Pseudouridine synthase, Rsu GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 1435147..1437534 GB:FROM 1435147 GB:TO 1437534 GB:DIRECTION + GB:PRODUCT Pseudouridine synthase, Rsu GB:PROTEIN_ID ABE38511.1 GB:DB_XREF GI:91682209 InterPro:IPR000748 InterPro:IPR002942 InterPro:IPR006145 LENGTH 795 SQ:AASEQ MPRDTDKNNASARGRRDRPGGGKTSSGGKGGFGGKGGFGGKSAGGGKGRSGAARGPEKKFAKRGEGTFEARADKPFAKKTFGGDAKRAFGGEGKRPYVKRDGAAPRRDFADRPRRDDGDAPRPRFNRDERPARSGGDRPERGPRKEFGEKRAFAPREGGEKRPYTPRPPRDDRGGDRPFKRDDRAPRRDRGDDARPAGRFGDKKFGDKKFGEKRPYTPREGGDKRPYTPREGGEKRPYTPREGGEKRPYAAREGGEKRPYTPRDGGEKRSYAPREGGDKRPYTPRGEGFRKDGERSRPTGDRPFGARPSRDGKFGGDKKFGRGAPDRGPRKDFGSRPDRGGDRGDAKPWQKRDGDSAERGRSFDKPRFDKPREERGGDRPRFSRDDRPKFERRERTGDWHEHPRNEGPSSDRPRSRDNGERGFDRPRRENEDESKIFAKRPAFGGRGAYRERPKTDRSKTERRAAPAPAKADKAGDRIAKVVARAGLCSRRDAEAWIVEGRVAVNGRVIDSPALDVTYSDVITVDGKPLPERERTRLFLYHKPRGLMTTHADPEGRPTVFDNLPEDLPRLISIGRLDFNTEGLLLLTNDGGLARALELPETGWLRRYRVRAHGEVTQAQLDQLASGVEVDGVKYGPIEAKLERDQGANVWLVFAIREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLEIEEGQVEEVKTRVLREQLGEKIIKLAEADFGGPSPSETRPKPRPGKPVAAEDGPAPKKKAVVKRGAVEDRKGRKVKVERTGSGDRDPSRGPARRYHGKREPAPRED GT:EXON 1|1-795:0| BL:SWS:NREP 3 BL:SWS:REP 214->307|IF2_DESRM|9e-16|55.1|89/985| BL:SWS:REP 364->434|Y955_SYNY3|3e-04|47.3|55/384| BL:SWS:REP 477->704|Y321_RICBR|1e-54|46.9|226/229| PROS 574->588|PS01149|PSI_RSU|PDOC00885| NREPEAT 2 REPEAT 5|137->159|212->233|234->255|256->277|278->300| REPEAT 2|351->393|394->440| SEG 20->55|gggktssggkggfggkggfggksagggkgrsgaarg| SEG 100->125|rdgaaprrdfadrprrddgdaprprf| SEG 162->211|rpytprpprddrggdrpfkrddraprrdrgddarpagrfgdkkfgdkkfg| SEG 310->323|rdgkfggdkkfgrg| SEG 336->345|rpdrggdrgd| SEG 464->474|aapapakadka| BL:PDB:NREP 1 BL:PDB:REP 477->679|3dh3C|1e-19|32.1|196/239| RP:PDB:NREP 1 RP:PDB:REP 475->704|3dh3A|2e-28|23.1|225/240| RP:PFM:NREP 1 RP:PFM:REP 536->613|PF00849|7e-09|47.4|78/149|PseudoU_synth_2| HM:PFM:NREP 2 HM:PFM:REP 477->522|PF01479|4.4e-14|47.8|46/48|S4| HM:PFM:REP 537->669|PF00849|1.5e-11|26.3|133/164|PseudoU_synth_2| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 2 RP:SCP:REP 477->530|1vioA2|9e-14|24.1|54/58|d.66.1.5| RP:SCP:REP 536->687|1kskA4|7e-30|30.9|149/172|d.265.1.3| HM:SCP:REP 451->576|1fjgD_|6.6e-27|36.6|123/208|d.66.1.2|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 533->707|1vioA1|1e-35|32.6|172/0|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 1968 OP:NHOMOORG 935 OP:PATTERN -------------------------------------------------------------------- 1221111111111111111-11111111111111111111111111111111112111--11111111111-1111111111121222111111-11--21333133312-1111111-11111111111111111111111111122122222222222212112222221211111211111112222-222-4444444344444422222244422232332222223322222222222222222222-21111111222211112222213333323333322222222222222333333333333333333333323324222222242422223233232122221122131111222222-21111333211111121111111111111111111111-3322212112112111222222221144121111112221111111111111222------------1111111111111-----1212-2222232232333333333233333333332333322232333332322532434453334333322233421112111111111111111121111113111211111111111111111112111233342344624544555445634435-66366--2111211111143332444443444444-4444444444444444444444333344444444444444444544434442-433343333444--2211111222224224333323232233222222222244322444433334-33333331111111113444544444445444455355454111111122211111111111121311111-11111--11111--12---2212211111123 11--21--311-------------------------------------------------------------------------------------------------911-----111111111212-252-122111-111111111121-21---2----3---------1-1-13C3331111-1-11323222- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 370 STR:RPRED 46.5 SQ:SECSTR ##############################################################################################################################################################################################################################################################################################################################################################################################cccccccTTcccccc######ccccccccccccccccccccccccccTTHHHHTTHHHHHHHHTccHHHHHHHHHHHHHccccTTTTTTHHHcEEHHHHHHTTTcccHHHHHHHHHTTcEEETTEEccTTcEEcTTccEEETTEEEccccGGGccEEEEEEcTTcccccccccTTcHHHHHTccccccEEcccccTTcEEEEEEEccTTHHHHHHcGGGcccEEEEEEEcccccHHHHHHHHTccccccccccccEEEcEEEEccccEEEEEEccccTTHHHHHHHHTTccEEEEEEEEETTEEcTTccTTcEEEccHHHHHEEGGGccTTccEEEE###cTTTHH#HHTTcccEETTTcccccccccccEEEEEETTcc################################# DISOP:02AL 1-31,40-74,110-146,150-150,155-158,160-196,205-474,713-796| PSIPRED cccccccccHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHcccccccHHcccccccHHHccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHcccEEEccEEEcccccccccccEEEEccEEEccccccEEEEEEccccEEEccccccccHHHHHHHHHcccccEEcccccccccEEEEEEccHHHHHHHHHHHHcccEEEEEEEEccccHHHHHHHHcccEEccEEEccEEEEEEcccccEEEEEEEEccccHHHHHHHHHHcccEEEEEEEEEEEcEEccccccccEEEccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //