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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38568.1
DDBJ      :             NADH dehydrogenase (quinone)
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  545/915 : Eukaryota  169/199 : Viruses  0/175   --->[See Alignment]
a.29.12c.142.1d.15.13
:428 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   36->427 3i9v1 PDBj 4e-75 41.9 %
:RPS:SCOP  14->242 2fug12  c.142.1.1 * 3e-56 37.8 %
:RPS:SCOP  244->326 2fug13  d.15.13.1 * 6e-19 45.1 %
:RPS:SCOP  329->426 2fug11  a.29.12.1 * 2e-11 37.5 %
:HMM:SCOP  14->243 2fug12 c.142.1.1 * 4.6e-78 54.9 %
:HMM:SCOP  244->326 2fug13 d.15.13.1 * 2.8e-21 50.0 %
:HMM:SCOP  327->427 2fug11 a.29.12.1 * 2e-24 40.4 %
:RPS:PFM   60->223 PF01512 * Complex1_51K 8e-30 48.3 %
:RPS:PFM   333->376 PF10589 * NADH_4Fe-4S 2e-10 56.8 %
:HMM:PFM   47->222 PF01512 * Complex1_51K 3.7e-53 53.3 150/151  
:HMM:PFM   331->376 PF10589 * NADH_4Fe-4S 1.9e-19 45.7 46/46  
:HMM:PFM   247->277 PF10531 * SLBB 6.5e-08 45.2 31/59  
:BLT:SWISS 5->420 NUOF_SALTY 2e-91 43.2 %
:PROS 344->355|PS00645|COMPLEX1_51K_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38568.1 GT:GENE ABE38568.1 GT:PRODUCT NADH dehydrogenase (quinone) GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 1496911..1498197 GB:FROM 1496911 GB:TO 1498197 GB:DIRECTION + GB:PRODUCT NADH dehydrogenase (quinone) GB:PROTEIN_ID ABE38568.1 GB:DB_XREF GI:91682266 InterPro:IPR001949 InterPro:IPR011538 LENGTH 428 SQ:AASEQ MSEKPLTGRARPDRQPHSLAAWRGLGGGAALALALKRHSPEAVIAMVEAAGLRGRGGAGFPTANKWRFMRAGADKAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYATGATEVIILVRDEYRAAAAALTRAITEAEQAGWLGRDILGSGFDLTMRVHTSAGRYIVGEETALIAALEGERPVPRHRPPYPAVSGLWGRPTTVNNVETLSAVPSIVENGADWYRGLSRSDEGGTKLYGVSGCVARPQLIEAPMGTTGRELIEICGGIRNGRALFAFQPGGGATAFLETAELDVPLDFTHTKKAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDGLPWVAKLLDTLEAGRGAKADLDLLHSHVQLSAPSGRSYCDLNTGALTPLKSGLERFGDIFTAHLQGSCPVGRA GT:EXON 1|1-428:0| BL:SWS:NREP 1 BL:SWS:REP 5->420|NUOF_SALTY|2e-91|43.2|412/445| PROS 344->355|PS00645|COMPLEX1_51K_2|PDOC00555| SEG 24->35|glgggaalalal| SEG 49->59|aaglrgrggag| SEG 109->123|iegatiaayatgate| SEG 133->147|raaaaaltraiteae| BL:PDB:NREP 1 BL:PDB:REP 36->427|3i9v1|4e-75|41.9|384/437| RP:PFM:NREP 2 RP:PFM:REP 60->223|PF01512|8e-30|48.3|149/162|Complex1_51K| RP:PFM:REP 333->376|PF10589|2e-10|56.8|44/46|NADH_4Fe-4S| HM:PFM:NREP 3 HM:PFM:REP 47->222|PF01512|3.7e-53|53.3|150/151|Complex1_51K| HM:PFM:REP 331->376|PF10589|1.9e-19|45.7|46/46|NADH_4Fe-4S| HM:PFM:REP 247->277|PF10531|6.5e-08|45.2|31/59|SLBB| GO:PFM:NREP 4 GO:PFM GO:0010181|"GO:FMN binding"|PF01512|IPR011538| GO:PFM GO:0016651|"GO:oxidoreductase activity, acting on NADH or NADPH"|PF01512|IPR011538| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF01512|IPR011538| GO:PFM GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|PF01512|IPR011538| RP:SCP:NREP 3 RP:SCP:REP 14->242|2fug12|3e-56|37.8|225/243|c.142.1.1| RP:SCP:REP 244->326|2fug13|6e-19|45.1|82/84|d.15.13.1| RP:SCP:REP 329->426|2fug11|2e-11|37.5|96/105|a.29.12.1| HM:SCP:REP 14->243|2fug12|4.6e-78|54.9|226/0|c.142.1.1|1/1|Nqo1 FMN-binding domain-like| HM:SCP:REP 244->326|2fug13|2.8e-21|50.0|82/0|d.15.13.1|1/1|Nqo1 middle domain-like| HM:SCP:REP 327->427|2fug11|2e-24|40.4|99/0|a.29.12.1|1/1|Nqo1C-terminal domain-like| OP:NHOMO 1084 OP:NHOMOORG 722 OP:PATTERN ------------------------1---11----1---------1--1----------1-1------- 11222---------12211-12--23111111322211111221-1--1-----1-----11211123411----------1-11112--1--1-----1-11--21111--------------1-----1---1-22222333111111111--11------11--11--------------11111331--------------------------------------------------------------1---------------------------------------------------------------------144-2111111111121------2-2113--23113436331211121--3--111111111233221133333311111111111-33333433221122223332223333112222333322311111111322-23111111111111111111111111111111121221-22112222222222222222222222223344412331331222223323321222121111111113232131-2-1--3-----343243275111111641--1---------------------11112---2---1-------------1----21--221111111111111111111111111-1111111111111111111111111111111111111111111111111111-11111111111111111111111114-121---------------11111111111-1111221122222-1111111111111--------------111111111111111111111111------------------------------------3223333333221 ----111-211-11111111111111111121111111121111111111111111111111111----1--211------1111111-12111111111111112-1-1115211-111-111111113A1-112--1111111-111-11-11-11111111111411311111111H1112131341111131111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 384 STR:RPRED 89.7 SQ:SECSTR ###################################HcccHHHHHHHHHTTTcccTTTTcccHHHHHTTcccccccc####cEEEEEcccccTTcccHHHHHHHcHHHHHHHHHHHHHHHTccEEEEEEcTTcHHHHHHHHHHHHHHHHTTcccTTGGGcccccEEEEEEccccGGGGcHHHHHHHHTTcccccccccccTTTccGGGccEEEEEHHHHHTHHHHHHccHHHHHTccccccccEEEEEEEccccccEEEEEETTccHHHHHTTTcccc##ccEEEEEccccccccEEccHHTccccTTTTGGGcccccccEEEEEETTccHHHHHHHHHHHHHHHcccccHHHHTTTTHHHHHHHHHTTTcccHHHHHHHHHHHHHH##TTccccTHHHHHHHHHHHHHHHHHHHHHHHHHTTccccc# DISOP:02AL 1-2,425-429| PSIPRED ccccccccccccccccccHHHHHHcccHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHccccccccccccEEEEEEcccccHHccccHHHHHccHHHHHccccEEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHcHHHcccccccEEEEEEccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccEEEEEEccccHHHHHHHHccccccccEEEEEccccccccccHHHccccEEEccHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcHHHHHHHHHcccccccc //