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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38644.1
DDBJ      :             Peptidoglycan-binding domain 1
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  264/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.20.1b.160.1
:716 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   321->385 2jxuA PDBj 4e-04 36.2 %
:RPS:PDB   343->574 3bkhA PDBj 1e-13 14.3 %
:RPS:SCOP  343->404 1lbuA1  a.20.1.1 * 8e-07 19.4 %
:RPS:SCOP  428->553 1zatA1  b.160.1.1 * 3e-19 13.4 %
:HMM:SCOP  330->407 1lbuA1 a.20.1.1 * 1.7e-07 20.5 %
:HMM:SCOP  427->573 1zatA1 b.160.1.1 * 4.4e-18 33.9 %
:RPS:PFM   432->573 PF03734 * YkuD 4e-08 41.0 %
:HMM:PFM   431->574 PF03734 * YkuD 1.1e-23 42.9 98/116  
:HMM:PFM   354->397 PF01471 * PG_binding_1 2.1e-11 34.1 44/57  
:BLT:SWISS 364->638 YCBB_ECOLI 1e-34 34.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38644.1 GT:GENE ABE38644.1 GT:PRODUCT Peptidoglycan-binding domain 1 GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(1572630..1574780) GB:FROM 1572630 GB:TO 1574780 GB:DIRECTION - GB:PRODUCT Peptidoglycan-binding domain 1 GB:PROTEIN_ID ABE38644.1 GB:DB_XREF GI:91682342 InterPro:IPR002477 LENGTH 716 SQ:AASEQ MRDHSTGRRGFEGVLMAVAATFLTVSVTSAIAQSPSKSPADLAIDAAVPVPQPVDLPPPSIGDFKPDTLAAPVNPPAETKTDSAAAPTQAAPAQAAPAPTAAAPETAPPPAATATAPAAEPAKEPVKAQATKDQPAEPQKAASSVPAADQPVADKVRDTLATKAARYFDRKAERAAVEKFYEGRDYAPVWTASGALTSAGKGVIARLKDAAADGLDPTDYPVPDFAAATSPDALAEAELRLTESMMDYARQAQSGRMHWSQAGSDIQYPEHPIDPAEVLANVTTAKDASAALDSYNPPHKPYRELKKKLAELRGESGMPVLKIAEGETLKFVPARKKQPAVTMDDPRVPQLRAKLGITEDADSSTYDAKVAEAVRKFQRSADLKPTGVLDDRTVKVLNTPKRDRSIDTIIVNMERWRWLPRQLGAASIGNAYVILNIPDYTLKVMQNGAQVWTTRVVTGKPGKHATPLLTETMKYITVNPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGSIHISQPPGEANALGRVRFNFPNKFLVYQHDTPDKNLFARDERAFSHGCMRVQNPDQYAAALLNITMPNERYTPEKIRSMYGRSEIDLKFPTPIPVNITYQTAFVDDDGKLQIRKDIYGRDSAMLAILRNDKGKNLEAVVAHSQPNYSRPTNLPPGVNVAGDYTGSSQASGFNFFERLFGGPPAPPQQQMRRQQQRYTR GT:EXON 1|1-716:0| BL:SWS:NREP 1 BL:SWS:REP 364->638|YCBB_ECOLI|1e-34|34.5|264/615| SEG 48->59|vpvpqpvdlppp| SEG 84->122|aaaptqaapaqaapaptaaapetapppaatatapaaepa| SEG 699->713|ppappqqqmrrqqqr| BL:PDB:NREP 1 BL:PDB:REP 321->385|2jxuA|4e-04|36.2|58/153| RP:PDB:NREP 1 RP:PDB:REP 343->574|3bkhA|1e-13|14.3|224/260| RP:PFM:NREP 1 RP:PFM:REP 432->573|PF03734|4e-08|41.0|117/136|YkuD| HM:PFM:NREP 2 HM:PFM:REP 431->574|PF03734|1.1e-23|42.9|98/116|YkuD| HM:PFM:REP 354->397|PF01471|2.1e-11|34.1|44/57|PG_binding_1| RP:SCP:NREP 2 RP:SCP:REP 343->404|1lbuA1|8e-07|19.4|62/83|a.20.1.1| RP:SCP:REP 428->553|1zatA1|3e-19|13.4|119/126|b.160.1.1| HM:SCP:REP 330->407|1lbuA1|1.7e-07|20.5|78/83|a.20.1.1|1/1|PGBD-like| HM:SCP:REP 427->573|1zatA1|4.4e-18|33.9|109/0|b.160.1.1|1/1|L,D-transpeptidase catalytic domain-like| OP:NHOMO 337 OP:NHOMOORG 264 OP:PATTERN -------------------------------------------------------------------- -21------------------------------------------------------------------------------------1------------1411-422-2---------------111111111-1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------1113-----222111111111111221222222-33334333221122222222222211--11111111111-------------111------------------------------11211-----------------------------1111-----1--11-1------1-------------11-11-411-1-1---------------1-------21-----------------------15--111121----11111111222211222121--1-1--------11111111111111111-1111111111111111111111111-1111111111111111111111111--111111111111--11---------1-1-1111111-11111111----------11-----111-----1-------------11121111111111------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 345 STR:RPRED 48.2 SQ:SECSTR ##########################################################################################################################################################################################################################################################EccccEEEETTEEEEccccHHHHHHHHHHHHHHHHHHT###ccGGGEEEHHHHcTTTccTTcTTccHHHHHTTTccccccHHHHHHHHTccccccHHHHHHHHHHTcccccccccccHHHHHHHHHHHHHTTccccccccHHHHHHHHHHcccccccGGGccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHTTccccccTTccEccTTTTccHHHHHHHHHHGGGTccccTTcGGGGcHHHHHHHHHHHHHHHHHGGGccHHHTTccTTccHHHHcHHHHHHcHHHHccTTcccccHHHHTTTEEHHHHHHHHTTccETTEEEEEETTGGGccccTTcccc###################################################################################################################### DISOP:02AL 1-6,32-40,72-105,112-112,115-130,702-717| PSIPRED cccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHHHHHHccccHHHccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccEEcHHHHHHHcccccHHHHHHHHHHHHHccccHHHccccccccEEEEEEEccEEEEEEEccEEEEEEEEEEEccccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHcHHHHHHcccEEEccccccEEEEEccccccccEEEEEEcccccEEEEccccccccccccccccccccEEcccHHHHHHHHHccccccccccHHHHHHcccccEEEEEEcccccEEEEEEEEEEccccEEEEEccHHHHHHHHHHHHccccccccccEEEcccccccccccccccEEEccccccccccccccHHHHHHccccccHHHHHHHHHHHHcc //