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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38666.1
DDBJ      :             diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  596/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
c.1.33d.110.3d.58.29d.81.1
:894 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   460->545 3iclA PDBj 8e-13 41.9 %
:BLT:PDB   626->877 3ii8B PDBj 1e-47 44.0 %
:RPS:PDB   74->125 2d01A PDBj 2e-05 15.4 %
:RPS:PDB   97->201 2cmnA PDBj 1e-05 10.5 %
:RPS:PDB   196->336 3c2wB PDBj 1e-10 9.5 %
:RPS:PDB   402->545 3btaA PDBj 6e-34 8.5 %
:RPS:PDB   633->876 2basA PDBj 3e-63 21.3 %
:RPS:SCOP  94->128 1oj5A  d.110.3.8 * 8e-06 11.4 %
:RPS:SCOP  191->318 1d06A  d.110.3.2 * 1e-10 16.7 %
:RPS:SCOP  339->448 1p97A  d.110.3.7 * 1e-08 9.8 %
:RPS:SCOP  462->588 1w25A3  d.58.29.2 * 9e-20 23.6 %
:RPS:SCOP  580->650 1vm6A2  d.81.1.3 * 1e-08 7.0 %
:RPS:SCOP  637->869 2basA1  c.1.33.1 * 4e-67 22.2 %
:HMM:SCOP  89->125 1otdA_ d.110.3.1 * 1.6e-05 27.0 %
:HMM:SCOP  208->320 1ll8A_ d.110.3.5 * 9.5e-16 20.7 %
:HMM:SCOP  316->440 1nwzA_ d.110.3.1 * 1.9e-18 26.0 %
:HMM:SCOP  462->619 1w25A3 d.58.29.2 * 3.1e-44 43.7 %
:HMM:SCOP  631->877 2basA1 c.1.33.1 * 3.1e-87 49.8 %
:RPS:PFM   207->274 PF00989 * PAS 2e-06 41.3 %
:RPS:PFM   457->590 PF00990 * GGDEF 2e-22 41.0 %
:RPS:PFM   633->867 PF00563 * EAL 4e-70 54.1 %
:HMM:PFM   632->867 PF00563 * EAL 2.3e-71 44.3 228/236  
:HMM:PFM   457->610 PF00990 * GGDEF 8.1e-36 37.7 154/161  
:HMM:PFM   212->321 PF08448 * PAS_4 2.7e-15 27.8 108/110  
:HMM:PFM   338->448 PF08448 * PAS_4 3.1e-07 21.8 110/110  
:HMM:PFM   89->125 PF00989 * PAS 1.5e-05 29.7 37/113  
:HMM:PFM   43->83 PF09835 * DUF2062 0.00069 22.0 41/154  
:BLT:SWISS 88->236 DIVL_CAUCR 4e-06 29.1 %
:BLT:SWISS 229->375 YQIR_BACSU 3e-04 27.9 %
:BLT:SWISS 442->871 Y091_CAUCR e-109 47.7 %
:REPEAT 2|194->320|321->446
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38666.1 GT:GENE ABE38666.1 GT:PRODUCT diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 1592248..1594932 GB:FROM 1592248 GB:TO 1594932 GB:DIRECTION + GB:PRODUCT diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) GB:PROTEIN_ID ABE38666.1 GB:DB_XREF GI:91682364 InterPro:IPR000014 InterPro:IPR000160 InterPro:IPR000700 InterPro:IPR001633 LENGTH 894 SQ:AASEQ MVLRIGKAGSGAAGAAAMAGLFASISLAQAAPQFEPGSQVGGFETELIWELLIGGFVLASFTSAVALWATAMLRKQRRAQRRKNILVNSVLNKLQQGVVITDANGTLVFCNDRYLELYGLQRSDVPCGIASHDMLALRRARGTLDLSNEEFYRHAATPEGFISELPDGRFVQVKFSQLANGGMISTHDDCTQLRRVSKQLATTSQFLESVIDNIPVCVAAKSIDDGRYILANRAFEKLSRLPREQIIGKTAEDLFPPRSAAVIRDSDRVTLESGKNGFRSELSIEFGQRDVVLATDRVVAFNERNEPEFIIVLFEDVTERQMLARELDKTRRFLELVVDNIPVAVTVQNASNGAYLLANRGAEVILNRRREDAIGLTSGEIFNAKEARLIEERDQLAIHKGGMMVEEYPISTKNGLRLFVTRRMTVADEAGNTNYLIKTHADVTDRRQTEARMAHMAYHDGLTDLPNRTAFLKALAQMIEACDCTVDQFAVLSVDLDGLAEINDVFGHAVGDKLLIEVARRIERASRGGVVARLSGDEFGLIIDGPQPQAAHALAERVAEALADGLEIDGKTVRTGVTTGIALFPRDGKDAASLLANAGAALFRAKARARGSVSLFAPEMDMQIRDRRALHQDLSNAIRNGELTLHYQPQAASSKSIDETDVVGFEALARWRHPTRGFVPPGEFIPLAEESGLIVEIGEWILREACREAASWPKPLQIAVNLSPAQFLNSDLVGFIHQVLLETGLQPGRLELEITEGVLIEDFERGLALLRRVKALGVRVSMDDFGSGYSSLTYLQAFPFDKIKIDRAFIMNLGRNAQSASIVRAVIGLGHGLGVSLVAEGVETQEQLDFLVDEGCDAVQGYLIGRPAPIDQFPCMVGLAPMLDEVPRLALQVG GT:EXON 1|1-894:0| BL:SWS:NREP 3 BL:SWS:REP 88->236|DIVL_CAUCR|4e-06|29.1|148/769| BL:SWS:REP 229->375|YQIR_BACSU|3e-04|27.9|136/692| BL:SWS:REP 442->871|Y091_CAUCR|e-109|47.7|426/809| NREPEAT 1 REPEAT 2|194->320|321->446| SEG 6->23|gkagsgaagaaamaglfa| SEG 550->563|aahalaervaeala| SEG 591->610|aasllanagaalfrakarar| BL:PDB:NREP 2 BL:PDB:REP 460->545|3iclA|8e-13|41.9|86/159| BL:PDB:REP 626->877|3ii8B|1e-47|44.0|241/256| RP:PDB:NREP 5 RP:PDB:REP 74->125|2d01A|2e-05|15.4|52/124| RP:PDB:REP 97->201|2cmnA|1e-05|10.5|104/117| RP:PDB:REP 196->336|3c2wB|1e-10|9.5|137/468| RP:PDB:REP 402->545|3btaA|6e-34|8.5|142/1277| RP:PDB:REP 633->876|2basA|3e-63|21.3|235/393| RP:PFM:NREP 3 RP:PFM:REP 207->274|PF00989|2e-06|41.3|63/112|PAS| RP:PFM:REP 457->590|PF00990|2e-22|41.0|134/160|GGDEF| RP:PFM:REP 633->867|PF00563|4e-70|54.1|231/236|EAL| HM:PFM:NREP 6 HM:PFM:REP 632->867|PF00563|2.3e-71|44.3|228/236|EAL| HM:PFM:REP 457->610|PF00990|8.1e-36|37.7|154/161|GGDEF| HM:PFM:REP 212->321|PF08448|2.7e-15|27.8|108/110|PAS_4| HM:PFM:REP 338->448|PF08448|3.1e-07|21.8|110/110|PAS_4| HM:PFM:REP 89->125|PF00989|1.5e-05|29.7|37/113|PAS| HM:PFM:REP 43->83|PF09835|0.00069|22.0|41/154|DUF2062| GO:PFM:NREP 1 GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00989|IPR013767| RP:SCP:NREP 6 RP:SCP:REP 94->128|1oj5A|8e-06|11.4|35/105|d.110.3.8| RP:SCP:REP 191->318|1d06A|1e-10|16.7|126/130|d.110.3.2| RP:SCP:REP 339->448|1p97A|1e-08|9.8|109/114|d.110.3.7| RP:SCP:REP 462->588|1w25A3|9e-20|23.6|127/162|d.58.29.2| RP:SCP:REP 580->650|1vm6A2|1e-08|7.0|71/86|d.81.1.3| RP:SCP:REP 637->869|2basA1|4e-67|22.2|225/257|c.1.33.1| HM:SCP:REP 89->125|1otdA_|1.6e-05|27.0|37/0|d.110.3.1|1/3|PYP-like sensor domain (PAS domain)| HM:SCP:REP 208->320|1ll8A_|9.5e-16|20.7|111/114|d.110.3.5|2/3|PYP-like sensor domain (PAS domain)| HM:SCP:REP 316->440|1nwzA_|1.9e-18|26.0|123/0|d.110.3.1|3/3|PYP-like sensor domain (PAS domain)| HM:SCP:REP 462->619|1w25A3|3.1e-44|43.7|158/0|d.58.29.2|1/1|Nucleotide cyclase| HM:SCP:REP 631->877|2basA1|3.1e-87|49.8|243/0|c.1.33.1|1/1|EAL domain-like| OP:NHOMO 6953 OP:NHOMOORG 610 OP:PATTERN -----------------------11------4-----------1--12-------------------- D2-69---111----3322-2B33-122222-744467539DCWm-------448-----863-B3F5552----1----C168AG57--------------------1--------------------1------46643---35dNIIEF112CC---3--BH5-AAH3------------H153131176-666664561666666-11111666554B1GC22222268--------------------------3---------------------------------------------------------------4964C33333335361L874464521--4785776A74717563334---7226BB41111124VMN779NHGLP4566466465B-NLJJK7GO9O41IIIKMQKOPPEEF9AC82A29C778A5--------D9A5-a7L--------11111111111111111-----8AAA3A9922IHHEIGC6665GGPZ999977JJRCIFT-1NMHTDREFR16h95JMQLIUcTJ-------76FOee35A77CDH6LGCBF-A8BN9C9KH22125732B563----------------JEGNE43TKFRTMZKWQlYZXXaWaOZXVVWUPMUYY---DUEX------FHC73N8JIIHJHJJJG-FJILJEFJIJGIIGIIHIHIIE89--1C89CCDCCCCBDDCCC9AA887CC1-B45555534555---I-1-1-EGFFB3hFP---------------5555513-1-DPQRTOQYSURQROQLOQQ-----2---T7IJEKKKKKRRQaYEEGHHHGDDG2222--P-AA759A111111113-8-------------------------1411124223--- --------------------------------------------------------------------------------------------------------------------------------------------------------------2----4-1-------A1----------1--B-----6---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 824 STR:RPRED 92.2 SQ:SECSTR ###################################################################HHHHHHTTcHHHHHHHHHHHHHcHHTccccEEEEcTTTcHHHHHHHHHHHHHHHHHHTTTGHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTcHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGccHHHHHHHHHGHHHHHHHHHHHHHHHHHHHTHHHHHHHHccHHHHHHHHHHGGccccccccTTcccccGGGccccccHHHHHHccHHHHTTTcccccccccccccccHHHHGGGGccccEEEcccccccEEEccccccccEEEEccHHHHHHcccccccTTcHHHHHHHHHHHHHHHHHHHHcEEEEcccEEEETTEEEEcGGGcccccTTcTTTccHHHHHHHHHHHTTccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTEEEccGGGcccGGGGEEEcccccccccHHHHHcTTTHHHHHHHHHHHHccEEEEEcccHccEEEcTTGHHHHHHTccccEEEEEEcccccHHHHHHHHHHHHHHHTTcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEcHHHEcccccEEEEEEEEEEEETTEEEEcHHHHccccccHHHHHHHHHHHHHHHHHHHTTccTTcEEEEccHHHHGGTTHHHHHHHHHHHHTTccGGGEEEEEccTTccccHHHHHHHHHHHHTTTcEEEEEEETTTcccHHHHHHHcccEEEEEcTTTHHHTcccHHHHHHHHHHHHHHHHTcEEEEEccccHHHHHHHHHTTEEEEccTTTcccccccccTTTEEETccccHHHHHHH### DISOP:02AL 1-1,5-7,75-84,891-895| PSIPRED cEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccEEEEcHHHHHHHcccHHHHcccccHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEcHHHHHHHcccHHHHccccHHHHccHHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEcHHHHHHHcccHHHHccccHHHHcccHHHHHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHcccEEEccEEEEEEEEEEEEEcccccccHHHHHHHccHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEccccccccEEEEEEEEEEEEcccccEEcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHcccHHHHHHHHHHHHccccHHHEEEEEEHHHHHccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHccccEEEEcHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHccccEEEEccccccccHHHHHHHHHccccccHHHHHHHHcc //