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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38680.1
DDBJ      :             Pyrimidine nucleoside phosphorylase-like
Swiss-Prot:TYPH_RHOPS   RecName: Full=Putative thymidine phosphorylase;         EC=2.4.2.4;AltName: Full=TdRPase;

Homologs  Archaea  30/68 : Bacteria  452/915 : Eukaryota  36/199 : Viruses  0/175   --->[See Alignment]
a.46.2c.27.1d.41.3
:514 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   124->480 2dsjA PDBj 9e-32 33.3 %
:RPS:PDB   103->481 2dsjA PDBj 1e-47 31.1 %
:RPS:SCOP  103->166 1azyA1  a.46.2.1 * 4e-10 29.7 %
:RPS:SCOP  170->412 1azyA2  c.27.1.1 * 2e-73 28.3 %
:RPS:SCOP  421->481 1azyA3  d.41.3.1 * 6e-08 26.2 %
:HMM:SCOP  98->166 2tptA1 a.46.2.1 * 3.4e-12 31.9 %
:HMM:SCOP  163->426 2tptA2 c.27.1.1 * 5e-66 37.2 %
:HMM:SCOP  420->505 1uouA3 d.41.3.1 * 4.2e-16 36.0 %
:RPS:PFM   173->401 PF00591 * Glycos_transf_3 4e-14 35.5 %
:RPS:PFM   453->488 PF07831 * PYNP_C 9e-06 47.2 %
:HMM:PFM   434->497 PF07831 * PYNP_C 9.3e-18 42.2 64/75  
:HMM:PFM   171->401 PF00591 * Glycos_transf_3 4.1e-15 20.3 222/254  
:HMM:PFM   102->162 PF02885 * Glycos_trans_3N 8.3e-12 23.0 61/66  
:BLT:SWISS 1->514 TYPH_RHOPS 0.0 100.0 %
:PROS 206->221|PS00647|THYMID_PHOSPHORYLASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38680.1 GT:GENE ABE38680.1 GT:PRODUCT Pyrimidine nucleoside phosphorylase-like GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(1611744..1613288) GB:FROM 1611744 GB:TO 1613288 GB:DIRECTION - GB:PRODUCT Pyrimidine nucleoside phosphorylase-like GB:PROTEIN_ID ABE38680.1 GB:DB_XREF GI:91682378 InterPro:IPR000053 InterPro:IPR000312 InterPro:IPR013102 LENGTH 514 SQ:AASEQ MNASHLSRPPLTIRRISLDTGRENVAVISRRSRALRADVFRGFSRVALRINTKVLLATLMITDDDAMIGPDELGLSEPAFRRFNEPVGSAVSVSPAQPPASLDAVRAKIQGHTLTPAEITAVIDDVAHFRYSDMEIAAFLISAARFTSTDELLALVDAMASVGTRLKWQNPIVVDKHCIGGIPGNRTTMIVVPIVAAQGLMIPKTSSRAITSPAGTADTMEVLARVDLDVEQMKRVVTTCGGCLIWGGHVNLSPADDILISVERPLSLDTPEQMVASIMSKKLAAGSTRLLIDFPVGPSAKIASASEAMRLRKLFEFVGDHFGIAVEVVTTDGRQPIGRGIGPVLEARDVMAVLGNEPNAPADLREKSLRLAAHLLEYDPLLRGGAGYARAKELLDSGAALKKMQQIIDAQGPSVCNSELGSHAADVLAPADGVVNGIDCLRINRLARTAGAPIVKGAGIDLFKKIGDRVDQGEPIYRIYASDRSELDLAIAAAEAESGFSVNHHSPAAVEPVS GT:EXON 1|1-514:0| SW:ID TYPH_RHOPS SW:DE RecName: Full=Putative thymidine phosphorylase; EC=2.4.2.4;AltName: Full=TdRPase; SW:GN OrderedLocusNames=RPD_1443; SW:KW Complete proteome; Glycosyltransferase; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->514|TYPH_RHOPS|0.0|100.0|514/514| GO:SWS:NREP 2 GO:SWS GO:0016757|"GO:transferase activity, transferring glycosyl groups"|Glycosyltransferase| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| PROS 206->221|PS00647|THYMID_PHOSPHORYLASE|PDOC00557| SEG 490->497|aiaaaeae| BL:PDB:NREP 1 BL:PDB:REP 124->480|2dsjA|9e-32|33.3|339/423| RP:PDB:NREP 1 RP:PDB:REP 103->481|2dsjA|1e-47|31.1|370/423| RP:PFM:NREP 2 RP:PFM:REP 173->401|PF00591|4e-14|35.5|217/252|Glycos_transf_3| RP:PFM:REP 453->488|PF07831|9e-06|47.2|36/75|PYNP_C| HM:PFM:NREP 3 HM:PFM:REP 434->497|PF07831|9.3e-18|42.2|64/75|PYNP_C| HM:PFM:REP 171->401|PF00591|4.1e-15|20.3|222/254|Glycos_transf_3| HM:PFM:REP 102->162|PF02885|8.3e-12|23.0|61/66|Glycos_trans_3N| GO:PFM:NREP 4 GO:PFM GO:0008152|"GO:metabolic process"|PF00591|IPR000312| GO:PFM GO:0016757|"GO:transferase activity, transferring glycosyl groups"|PF00591|IPR000312| GO:PFM GO:0006213|"GO:pyrimidine nucleoside metabolic process"|PF07831|IPR013102| GO:PFM GO:0016763|"GO:transferase activity, transferring pentosyl groups"|PF07831|IPR013102| RP:SCP:NREP 3 RP:SCP:REP 103->166|1azyA1|4e-10|29.7|64/70|a.46.2.1| RP:SCP:REP 170->412|1azyA2|2e-73|28.3|240/265|c.27.1.1| RP:SCP:REP 421->481|1azyA3|6e-08|26.2|61/105|d.41.3.1| HM:SCP:REP 98->166|2tptA1|3.4e-12|31.9|69/70|a.46.2.1|1/1|Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain| HM:SCP:REP 163->426|2tptA2|5e-66|37.2|261/0|c.27.1.1|1/1|Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain| HM:SCP:REP 420->505|1uouA3|4.2e-16|36.0|86/105|d.41.3.1|1/1|Pyrimidine nucleoside phosphorylase C-terminal domain| OP:NHOMO 579 OP:NHOMOORG 518 OP:PATTERN --1--1----------1------2-------1---111111111111111111-1111111------- 1-1-11------1-11111-31--1111111111111111-1111111111111111---1111211111--------1---1---------------------1---1-------------------------1-1-1-----1--------------------------------------1111111-111222222221222222111111222111111111111111111111111111111111111-1-11-------11111-----111---111111111111111111-------------111---11111111-1111111111111111111111-11-11111111111111111-11-11--2-------1111--111-1------------11-11-11211-1111111111111---11111111211--------------1--------------------------------1-1-------1111--1-11----1111-11--122---2211--2---11---------1--------------1-----------------------111111-----------------------------112---11--11111111111111111111--1----------11111111111111111-1111111111111111111111111-11111111111111111111111111-1--111111111---2------1111-11-----------------------------------------1-------------11111111111111--------------------------------1-1----1-11121111111111111111111111111-2- ------1-------------------------------------------------------------------------------------------------------112111-1---11-121217C1-113-1-1------11--1--11--11----512-------1------------------11----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 395 STR:RPRED 76.8 SQ:SECSTR ##############################################################################################ccccccHHHHHHHHHTTccccHHHHHHHHHHHHTTcccHHHHHHHHHHHHHcccHHHHHHHHHHHHTcccccccTTcccEEEEEEcccccccTHHHHHHHHHTTTccEEEEcccccTTcccHHHHHTTcTcccccHHHHHHHHHHTcEEEEEccGGGccHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHTccEEEEEEEEcccTTcccHHHHHHHHHHHHHHHHHTTcEEEEEEEEcccccccEEEcHHHHHHHHHHHTTcTcccHHHHHHHHHHHHHHHHHTTccccTccTHHHHHHHHTcHHHHHHHHHHHHTTccGGGGccccEEEEEEccccEEEEEEcHHHHTcccccTTccccTTcEEEEcccTTcEEcTTcEEEEEEEcccccHHH######################### DISOP:02AL 1-11,89-92,508-510,514-515| PSIPRED cccccccccccEEEEEEccccccEEEEEccccccccccccccccEEEEEEcccEEEEEEEEcccccccccccccccHHHHHHcccccccEEEcccccccHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccEEEEccccccccHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHcccccccHHHHHHHHHHccEEEEEcccccHHHHHHHHHccccccccccHHHHHHHHHccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEEEccccccHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHcccccEEEEEEcccccEEEEEEHHHHHHHHHHHcccccHHHEEEEEEccccEEccccEEEEEEEccHHHHHHHEEEccccccEEEcccccccccccc //