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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38818.1
DDBJ      :             L-carnitine dehydratase/bile acid-inducible protein F
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  362/915 : Eukaryota  140/199 : Viruses  0/175   --->[See Alignment]
c.123.1
:814 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->378 1vgqA PDBj 3e-14 22.3 %
:BLT:PDB   396->797 2vjpA PDBj 4e-38 31.1 %
:RPS:PDB   102->212 2c9eA PDBj 1e-09 9.0 %
:RPS:PDB   475->562 2c9eA PDBj 8e-21 11.4 %
:RPS:SCOP  3->378 1xa3A  c.123.1.1 * 1e-52 20.0 %
:RPS:SCOP  394->797 1xa3A  c.123.1.1 * 1e-77 20.5 %
:HMM:SCOP  2->387 1q7eA_ c.123.1.1 * 1e-79 34.1 %
:HMM:SCOP  393->797 1q7eA_ c.123.1.1 * 9.5e-105 36.0 %
:RPS:PFM   76->258 PF02515 * CoA_transf_3 5e-15 31.5 %
:RPS:PFM   468->658 PF02515 * CoA_transf_3 5e-31 37.6 %
:HMM:PFM   76->260 PF02515 * CoA_transf_3 6.5e-41 35.3 184/191  
:HMM:PFM   468->658 PF02515 * CoA_transf_3 1.2e-59 43.7 190/191  
:BLT:SWISS 25->334 YFDE_ECOLI 1e-25 26.9 %
:BLT:SWISS 396->797 FCTA_OXAFO 1e-37 31.1 %
:REPEAT 2|3->378|394->788
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38818.1 GT:GENE ABE38818.1 GT:PRODUCT L-carnitine dehydratase/bile acid-inducible protein F GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(1775149..1777593) GB:FROM 1775149 GB:TO 1777593 GB:DIRECTION - GB:PRODUCT L-carnitine dehydratase/bile acid-inducible protein F GB:PROTEIN_ID ABE38818.1 GB:DB_XREF GI:91682516 InterPro:IPR003673 LENGTH 814 SQ:AASEQ MRALPLSELRVVEIGSGDALAYCGKLFADFGAEVIKVEPPGGDPDRQIAPLVDAGGRSESATFAWLNTNKYSIIGDLDRPDDTARIERLLADSDLLLDARHPAAIEASPLSHRRLREVQPGLAITSLSWFGEHGPYRDYLATDSVCRSLAGLVKLVGPAEGPPVLPRDGQIAVIAGLTAFIPTLAGLYARADQGARRFAVNAFEAMLQITEFDIALALEAGSTRPRIGLNRFGRGFPVGNYATKDGWLGVTVVTPAQWLGFCAMIGLPELGPDPRYSATADRFIHADELNSIIRPVLMHKTALEWFERGIELRLPLALIPDMAQLLAQPVMRERGAFAKVEIGASSFDAPVLPQRLTKSPGKPNGRAPRAGEHNDAELSPRRRTAERAVRPNEALPLSGIRIVDLTMGWAGPSAVRQLGDLGADIIKVESCQYPDWFRGTDPRGPYHPERTYEKTYWFQTMNRNKRGITLDLTTDDGRAVLKQLLAGADAVIDNYAADVLPRLGLDVAAMQAINPRLVVVTMPAFGITGRWSAARAYGSTLEQASGLPSVTGRDGDPPTMLHAALGDPVGGLNAAAALMLGLMHQKRTGDGQHIDLSQVECMLPMLASSIIEQSATGHTSPRIGNRHPRFVPSGCFPCAGDDQWVTLAVQTDAQWKALCRVMHRPDFAADPSLATADGRRADEDRIEIAVRHWTSSVRPELAMVTLQEAGIAAGVARLPIDLVGDPHLLKTGHWQPVVRRFMGAHLLPSVSYREDFADLPYPIERLAPTLGQHNDEVLRELGLSDAEIEGLHDRGVIGNVATTKKSGGVRLAAE GT:EXON 1|1-814:0| BL:SWS:NREP 2 BL:SWS:REP 25->334|YFDE_ECOLI|1e-25|26.9|305/381| BL:SWS:REP 396->797|FCTA_OXAFO|1e-37|31.1|376/428| NREPEAT 1 REPEAT 2|3->378|394->788| SEG 89->99|lladsdlllda| SEG 570->583|gglnaaaalmlglm| BL:PDB:NREP 2 BL:PDB:REP 5->378|1vgqA|3e-14|22.3|359/427| BL:PDB:REP 396->797|2vjpA|4e-38|31.1|376/427| RP:PDB:NREP 2 RP:PDB:REP 102->212|2c9eA|1e-09|9.0|111/317| RP:PDB:REP 475->562|2c9eA|8e-21|11.4|88/317| RP:PFM:NREP 2 RP:PFM:REP 76->258|PF02515|5e-15|31.5|182/189|CoA_transf_3| RP:PFM:REP 468->658|PF02515|5e-31|37.6|189/189|CoA_transf_3| HM:PFM:NREP 2 HM:PFM:REP 76->260|PF02515|6.5e-41|35.3|184/191|CoA_transf_3| HM:PFM:REP 468->658|PF02515|1.2e-59|43.7|190/191|CoA_transf_3| GO:PFM:NREP 4 GO:PFM GO:0003824|"GO:catalytic activity"|PF02515|IPR003673| GO:PFM GO:0008152|"GO:metabolic process"|PF02515|IPR003673| GO:PFM GO:0003824|"GO:catalytic activity"|PF02515|IPR003673| GO:PFM GO:0008152|"GO:metabolic process"|PF02515|IPR003673| RP:SCP:NREP 2 RP:SCP:REP 3->378|1xa3A|1e-52|20.0|365/400|c.123.1.1| RP:SCP:REP 394->797|1xa3A|1e-77|20.5|385/400|c.123.1.1| HM:SCP:REP 2->387|1q7eA_|1e-79|34.1|381/417|c.123.1.1|1/2|CoA-transferase family III (CaiB/BaiF)| HM:SCP:REP 393->797|1q7eA_|9.5e-105|36.0|394/417|c.123.1.1|2/2|CoA-transferase family III (CaiB/BaiF)| OP:NHOMO 2293 OP:NHOMOORG 523 OP:PATTERN --1----221412222-1-211-51--12-32-------------------------------2---- --225--2---1--4PF33-3E--CP333337DDHE4EPb-J3U1--2----442211--12A122B6634-111----1616------------------1------12--------------------------54485---32----------------------------------------11---11----------------1--------22323--------1----------------------2------2-1--11--------------------------------------------------------12--2222222-2--3-------1---1----87-1-------------1--6339-----2-JAC--7A599633442443442-34A33C39854-41111222133296462658222426622222222511--623------------------------------35C7-5sYFeDCCEGE4556688GE776747S5SQZlZ2678464887L8H9OS456----11----------821-121------------2--2----111111-6---------------------------1---1-4-3--1------1----1-11-1--------------1-2-3--3333333333-2333333333233223221------111111111111111111122333321----------------------1111-2212---------------44324242222155553656342453223------------------------------------------111111------------------------------------------------- ----111-----1115432544344553311112224444355222322555A7453123221--------------------------24242223111112231-2-13121211-1121121325-8N2-533112-3-222111212115-232822112121121A--12-1------11---52---11111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 767 STR:RPRED 94.2 SQ:SECSTR ####TTTTcEEEEcccccHHHHHHHHHHHTTcEEEEEEETTccGGGcccTTcccTcE#ccHHHHTTccccEEEEEcTTcHHHHHHHHHHHHHccEEEEcccTTcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHTTcTTccccHHHHHHHHHHHHHHHHTccHHHHHHGGGTcTTHHHHHHHHHHTccHHHHcccTTcGGGcTTccccTTcccccGGGcccTTcEEEEEccGGGGHHHHHHHTTcGGGcccTTTccHHHHTTTHHHHHHHHHHTTTTccHHHHHHHHHHTTccEEEcccHHHHHTcHHHHHTTcEEEETTTccEE########EEccccccccccccTTTTHHHHH#################TTTTcEEEEcccccHHHHHHHHHHHTTcEEEEEEETTTccGGGGccccTHcccccTTcccHHHHTTccccEEEEEcTTccHHHHHHHHHHHHHHHHHTTccTTcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHTTcTTccccHHccTTHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHTHHHHHHHHHHHHHcccccTTcGGGcTTccccTTccTcEEEEEccGGGGHHHHHHHTTcGGGcccTTTccHHHHTTTccHHHHHHHHHHHTccHHHHHHHHGHTTccEEEcccHHHHHTcHHHHHTTcEEEEccTTTccEEEEcccccccccccccccccccccTTTTHHHHHHHTTccHHHHHHHHHTTcc################# DISOP:02AL 1-2,803-810,812-815| PSIPRED cccccccccEEEEEccccHHHHHHHHHHHHccEEEEEEcccccccccccccccccccccHHHHHHHccccEEEEEEcccHHHHHHHHHHHccccEEHHHcccHHHHHccccHHHHHHHcccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEccccEEEEEEccHHHHHHHHHHcccHHHcccHHHcccHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHccccEEEcccHHHHHccHHHHHcccEEEEEcccccEEEEEEccccccccccccccccccccccHHHHcccccccccccccccHHHHHcEEEEEEcccHHHHHHHHHHHHHccEEEEEccccccccccccccccccccccccccHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHccEEEEcccHHHHHHccccHHHHHHHcccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEccccEEEEEEccHHHHHHHHHHccccccccccccccHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEEccHHHHHHcHHHHHcccEEEEEccccccEEcccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHccccccccccccccccccccc //