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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE38853.1
DDBJ      :             polysaccharide biosynthesis protein CapD
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  486/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
b.53.1c.2.1
:638 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   292->609 2gn4B PDBj 1e-26 29.8 %
:RPS:PDB   258->427 1ds6B PDBj 9e-12 8.6 %
:RPS:PDB   465->585 3d5bZ PDBj 4e-21 13.4 %
:RPS:SCOP  287->320 1bvrA  c.2.1.2 * 3e-05 33.3 %
:RPS:SCOP  298->494 1vl0A  c.2.1.2 * 2e-16 26.2 %
:RPS:SCOP  465->585 1feuA  b.53.1.1 * 2e-24 11.3 %
:HMM:SCOP  296->569 1udbA_ c.2.1.2 * 6.5e-52 34.7 %
:RPS:PFM   298->580 PF02719 * Polysacc_synt_2 7e-71 53.4 %
:HMM:PFM   298->593 PF02719 * Polysacc_synt_2 9.8e-107 47.9 286/296  
:BLT:SWISS 73->588 EPSC_BACSU 4e-64 34.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE38853.1 GT:GENE ABE38853.1 GT:PRODUCT polysaccharide biosynthesis protein CapD GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 1810567..1812483 GB:FROM 1810567 GB:TO 1812483 GB:DIRECTION + GB:PRODUCT polysaccharide biosynthesis protein CapD GB:PROTEIN_ID ABE38853.1 GB:DB_XREF GI:91682551 InterPro:IPR001509 InterPro:IPR002198 InterPro:IPR002225 InterPro:IPR003869 InterPro:IPR005913 LENGTH 638 SQ:AASEQ MVMRFFSKMRSRNYLIILHDVIATACAILTSFYLRFDGEDLSARLPLLWTLMPGFLLLSVVVFYVFRLTTSKWRFVSLPDGINILRAATVLTVVLIITDYIFLAPDAYGTFFLGRITIVLYWFLEVAFLSAPRFAYRYFRYTRTRNQAKAINAAPTVLIGRAADAEILIRGIESGAVKQLWPVGILSPSAADRGQLVRNIPVLGGIGDLQDVVADYARRGKPIERVVMTPSAFEPDAHAESILVRARKLGLLVSRLPSLEESRDVPRLAAVAVEDLLLRPTEKIDYGRLEALVKGKAVIVTGGGGSIGAEICARVATFGAARLLVIENSEPALYAVVETLSATLVQIRVEGRIADIRDRERILGLMNEFKPDLVFHAAALKHVPILERDWSEAVKTNIFGSINVADAALAAGAEAMVMISTDKAIEPVSMLGLTKRFAEMYCQALDRELSDKGAGKTPMRLISVRFGNVLASNGSVVPKFKAQIEAGGPVTVTHPDMVRYFMTIREACDLVITAATHALTSACSDVSVYVLNMGQPVRIVELAERMIKLSGLEPGHDIEIVYTGVRPGERLNEILFAHQEPTIEIGIAGVMAAKPNEPKMQTLRDWIISLDEAIATNDHARVQLVLKDAVPEFGVSMA GT:EXON 1|1-638:0| BL:SWS:NREP 1 BL:SWS:REP 73->588|EPSC_BACSU|4e-64|34.0|485/598| TM:NTM 4 TM:REGION 14->35| TM:REGION 45->67| TM:REGION 83->105| TM:REGION 112->134| SEG 55->68|flllsvvvfyvfrl| SEG 133->145|rfayryfrytrtr| SEG 405->415|adaalaagaea| BL:PDB:NREP 1 BL:PDB:REP 292->609|2gn4B|1e-26|29.8|292/327| RP:PDB:NREP 2 RP:PDB:REP 258->427|1ds6B|9e-12|8.6|162/179| RP:PDB:REP 465->585|3d5bZ|4e-21|13.4|112/188| RP:PFM:NREP 1 RP:PFM:REP 298->580|PF02719|7e-71|53.4|264/291|Polysacc_synt_2| HM:PFM:NREP 1 HM:PFM:REP 298->593|PF02719|9.8e-107|47.9|286/296|Polysacc_synt_2| GO:PFM:NREP 1 GO:PFM GO:0009058|"GO:biosynthetic process"|PF02719|IPR003869| RP:SCP:NREP 3 RP:SCP:REP 287->320|1bvrA|3e-05|33.3|30/268|c.2.1.2| RP:SCP:REP 298->494|1vl0A|2e-16|26.2|160/281|c.2.1.2| RP:SCP:REP 465->585|1feuA|2e-24|11.3|115/185|b.53.1.1| HM:SCP:REP 296->569|1udbA_|6.5e-52|34.7|259/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 692 OP:NHOMOORG 501 OP:PATTERN ---------------------------1----1---11-1--1----1-1-1-------1-------2 -21-1--111-------------------------------111---2---1---1-2----1--1-------------12-1---1-5433-7-----121221211-2--------------1----11-121-11132-----1-----1----11-1-1------3--111111-11--1----11---3-----21--12-12--12221-13---1122------111222222221222212--21------------------1--------------1--21111121111-------------1--------1-11122221221222-122211-22311-1212113213111---1--2----2222-------11132-1121211111111111-1112121111--1---11222111--2121-21111---1111111111111212------------1111111111111-----1-11-111131111111111111121111111111111--2-111-1--21111222111111111111111141222221111-12----2221212211-21--222222222221211111111112111--22-11-2221222--32-11-111221213---13----------11--------------------------------------21--1---------------------1-----------------------1111111-2---1-1-----1--2111-1111111111212222212221111211111111-33221111112122111111111111111-11222222--------112-------------------------1121111111--- -------------2---------------------------------------------------------------------------------------------------------------------------------------------------------------2--------------1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 459 STR:RPRED 71.9 SQ:SECSTR ##################################################################################################################################################HHHcTTcccEEEEcccHHHHHHHHHHHHHHHH####HTcEEE########EEEEcTTccHHHHHHHHHHHHHcTTccEEEEcccccccccccHHHHTccGGGcTTcccHHHcHHHHHHTcHHHHHHHHHHTHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHTTTTcEEEEcGGGGGGGGcEEEccccGGGHHHHHHHHcEEEcccccccccTTcccGGGEEEETTccHcTTcEEEccccTTcccccHHHHHHHTTccccccccccEEEEcccHHHHHHTHHHHHHHHHHTcccHcccccccccHHEEEEccccHHHHHHHTEEEEEEEcTTccEEEEEEHHHHHHHHHHHTTTccEEEEcTcccHHHcETccEEEEEcccETTTTEEEEEEEEEcccccEEEEEEEEEccccHHHHTTcccEHEcccEEEEcEEEEEcGGGccccccccccccccHHHHHHcc##################### DISOP:02AL 1-8,145-151,235-236,637-639| PSIPRED ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHccccccEEEEEEccccHHcccEEccEEEcccHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHccccEEEcccHHHHccccccccccHHHHcccccccccHHHHHHHHcccEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHHHHHccccEEEccccEEEEEEEHHHHHHHHHHHHHHHHccccccccEEEEcccccEEHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHcccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHcc //