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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39045.1
DDBJ      :             secretion protein HlyD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  542/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
d.3.1d.41.2f.46.1
:397 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   68->380 2v4dB PDBj 5e-17 26.1 %
:RPS:PDB   63->124 3bg5A PDBj 1e-08 16.1 %
:RPS:PDB   207->319 3bsdA PDBj 4e-12 11.5 %
:RPS:SCOP  83->146 1qpnA2  d.41.2.1 * 2e-07 23.4 %
:RPS:SCOP  143->380 1iu4A  d.3.1.8 * 4e-28 9.1 %
:HMM:SCOP  79->300 1vf7A_ f.46.1.1 * 8e-44 28.8 %
:RPS:PFM   127->263 PF00529 * HlyD 7e-11 33.6 %
:HMM:PFM   93->182 PF00529 * HlyD 3.8e-13 32.6 89/306  
:HMM:PFM   187->280 PF00529 * HlyD 4.9e-10 23.4 94/306  
:BLT:SWISS 61->382 MDTA_YERE8 3e-27 30.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39045.1 GT:GENE ABE39045.1 GT:PRODUCT secretion protein HlyD GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 2023647..2024840 GB:FROM 2023647 GB:TO 2024840 GB:DIRECTION + GB:PRODUCT secretion protein HlyD GB:PROTEIN_ID ABE39045.1 GB:DB_XREF GI:91682743 InterPro:IPR006143 LENGTH 397 SQ:AASEQ MTIATENPSAARSTPEKPRPRPVRMTRWIIIVGLLLALLVGGLVGFNAFRSHMIAQFFANNKPPPITVSVAEANAEVVPNLLTAVGDLAAVHQVNVTSDVNGRITDILFTAGAEVKAGSKLLQLYDAPEQADLANFRAQAKVAELSLDRAKQLAARQFGPQATVDQAQASFDQASAGIARTEAVISQKLVRAPFDGVLGVRRVEVGQYLTAGTQIVTLTDLSRVYTNFTVTEKDSGTLKVGQVVRVSVDAYPGKVFEGKITTIEPQISSDTRNIRVQGTLENPEKILKPGMFATTTVVLPEKPAVVTVPETAVDYTLYGDSVFLIHEEKAEDGKINLTAVRTFVRTGDRVNGRAVILSGVKAGDRVVAVGQLKLQSGAAVAISKDPMPQIPAKPPRY GT:EXON 1|1-397:0| BL:SWS:NREP 1 BL:SWS:REP 61->382|MDTA_YERE8|3e-27|30.7|313/443| TM:NTM 1 TM:REGION 25->47| SEG 29->45|iiivglllallvgglvg| SEG 165->176|dqaqasfdqasa| BL:PDB:NREP 1 BL:PDB:REP 68->380|2v4dB|5e-17|26.1|303/327| RP:PDB:NREP 2 RP:PDB:REP 63->124|3bg5A|1e-08|16.1|62/1137| RP:PDB:REP 207->319|3bsdA|4e-12|11.5|113/359| RP:PFM:NREP 1 RP:PFM:REP 127->263|PF00529|7e-11|33.6|137/259|HlyD| HM:PFM:NREP 2 HM:PFM:REP 93->182|PF00529|3.8e-13|32.6|89/306|HlyD| HM:PFM:REP 187->280|PF00529|4.9e-10|23.4|94/306|HlyD| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF00529|IPR006143| GO:PFM GO:0009306|"GO:protein secretion"|PF00529|IPR006143| GO:PFM GO:0016020|"GO:membrane"|PF00529|IPR006143| RP:SCP:NREP 2 RP:SCP:REP 83->146|1qpnA2|2e-07|23.4|64/115|d.41.2.1| RP:SCP:REP 143->380|1iu4A|4e-28|9.1|231/331|d.3.1.8| HM:SCP:REP 79->300|1vf7A_|8e-44|28.8|222/237|f.46.1.1|1/1|HlyD-like secretion proteins| OP:NHOMO 2748 OP:NHOMOORG 547 OP:PATTERN -------------------------------------------------------------------- D9K--------------------------------------------------------------------------------213428998-911---12D274E8D39--------------34353512445321132-----4433442-133111233332D3592-3-1---3-11----11112-----------------------------------111--3-------------------------------------------------------------------------------------------152-6---------1--33---------1--412286232-15-----1-B63933611-1179KBGF5EHBBD845774766766-AC57AA9A4A7-FAA8CB7CCB888J5672-24244112333333333774259411--1----------1--------------1-54334437AAA9A86544477AB77775568B577G-49B9245559A556559D499545-------45946D-2523242363333-6B5AAA9785546786A22112111111121111111221-2665647937793589AA968AA77688AAA99---9425------54561424556466755-5645656566565444445768452254433244344334333655221251-444444433444--23331345889B3A542221112111111113333324-1-43AABA98AA889876669111111111357775555567577AA8686656612221121221122--------------------------------------1---1---3C2 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-------2--------------2-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 318 STR:RPRED 80.1 SQ:SECSTR ##############################################################ccEEEEEEcccTTcEEcTTcEEEEEEccccEEEEEccccEEccEEcccTTcEEcTTcEEEEcEcccTTEEEccHHGGGGGccccHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHcccccccEccccccEEEEEEcccTTEEEEEEEEccTTccEEEEEEEEEEcccccccccEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEEEccccEEEEEEEEEEEETTEEEEEEEEEEEEEEEccccHHHHHHHHccccccHHEEEEEcEcccTcccccTEEEccccccTTcEEEEETTTcccTTccc################# DISOP:02AL 1-22,53-67,380-398| PSIPRED ccEEEccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccEEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEcccEEEEEEcccccEEEcccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEccccEEEEEEEEccccEEccccEEEEEEEccEEEEEEEEcHHHHHHcccccEEEEEEEcccccEEEEEEEEEEccccccccEEEEEEEEEccccccccccEEEEEEEEcccccEEEEcHHHEEEcccccEEEEEEccccccccEEEEEEEEEEEEEEEEccEEEEEEccccccEEEEccHHHcccccEEEEEcccccccccccccc //