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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39081.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  674/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:315 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->253 3hhgG PDBj 7e-19 29.0 %
:RPS:PDB   1->140 1b9nA PDBj 4e-22 12.2 %
:RPS:SCOP  3->104 1b9mA1  a.4.5.8 * 3e-18 14.7 %
:RPS:SCOP  85->291 1utbA  c.94.1.1 * 1e-22 11.1 %
:HMM:SCOP  1->112 1b9mA1 a.4.5.8 * 3.7e-25 35.8 %
:HMM:SCOP  85->301 1uthA_ c.94.1.1 * 5.9e-37 26.8 %
:RPS:PFM   5->62 PF00126 * HTH_1 4e-07 43.1 %
:RPS:PFM   90->253 PF03466 * LysR_substrate 3e-14 34.1 %
:HMM:PFM   88->287 PF03466 * LysR_substrate 1.3e-37 27.6 199/209  
:HMM:PFM   5->63 PF00126 * HTH_1 5.9e-24 42.4 59/60  
:BLT:SWISS 2->254 GLTR_BACSU 3e-26 29.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39081.1 GT:GENE ABE39081.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(2065249..2066196) GB:FROM 2065249 GB:TO 2066196 GB:DIRECTION - GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABE39081.1 GB:DB_XREF GI:91682779 InterPro:IPR000847 InterPro:IPR005119 LENGTH 315 SQ:AASEQ MVDFKALETFLWVVTLGSFRGAAQKLNTTQPAISQRIAQLERELGVRLLQRDHRMASPTPSGRQLMLYAEKLIGLRTEMLAAVGDQSSMRGVLRLGVAETIVHTWLPGLIERVNRLYPNLSLEIEVDITPNLRARLLAQEIELAFLLGPMTASTVRSRVLCEYPIGFLASPSLGLGAGELAVQDLAKFPIITFPRKTQPYEIVRSLFNKPELPPIRLHASASLGTVIHMAIEGLGVAVIPTAIVEDELADGRLQLLQTNLTISPLRFSASWLASPDTAAIERVAELAVDIAHTGGFMPEAAQLCAALPAAEPAIG GT:EXON 1|1-315:0| BL:SWS:NREP 1 BL:SWS:REP 2->254|GLTR_BACSU|3e-26|29.3|249/296| SEG 298->313|peaaqlcaalpaaepa| BL:PDB:NREP 1 BL:PDB:REP 7->253|3hhgG|7e-19|29.0|238/294| RP:PDB:NREP 1 RP:PDB:REP 1->140|1b9nA|4e-22|12.2|139/258| RP:PFM:NREP 2 RP:PFM:REP 5->62|PF00126|4e-07|43.1|58/60|HTH_1| RP:PFM:REP 90->253|PF03466|3e-14|34.1|164/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 88->287|PF03466|1.3e-37|27.6|199/209|LysR_substrate| HM:PFM:REP 5->63|PF00126|5.9e-24|42.4|59/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 3->104|1b9mA1|3e-18|14.7|102/122|a.4.5.8| RP:SCP:REP 85->291|1utbA|1e-22|11.1|207/214|c.94.1.1| HM:SCP:REP 1->112|1b9mA1|3.7e-25|35.8|106/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 85->301|1uthA_|5.9e-37|26.8|213/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 6905 OP:NHOMOORG 681 OP:PATTERN -------------------------------------------------------------------- 4651621233411-66533-33224A333323145448HF-3234211-111555212--333-21A7782-111-1111352111--2211-1------13-111-1-1---------------1---1----1-45534---118325443121111111115297542111111111111121-----63C888889A958878A894BBDI98C2339542444443KP1111111-11111113--21-2335631113552262-122-31-1--------11-----------------------------------3579444545424223443221831-16332144531211311121---111B44------E4OPQ5559E5A77786659679H-9B977O8LFU21gNNJKNMdaWQQNK853DFLDBDG9II98999999CEEA6634-----------------------------11BK34EkXMgy*****XHKKHttxsQPQRDT*jvUoiX-2VSL9BE56mBTCrI6G87535N922222222223A683213231225333-31262424-24337A13--1------------------3-1176F7C7B7N5A68ECEGD6DFEAB9EDBGAGG--13427------KIIK7KGHHHFHGDFGG-HHGEJEEEHDHFHGGGHGFUcZLK49EFEEFFGGFGFGEGEFFXCDDCCCC3-HBBBBB9BBBBB---412111465511JGP333524134434212MONQPAF6B7N5hjdfTfeiHbaac8SUW---------5AJHMDDDDDCFJDCGDEEEEE7781-1-1-3222--------------------------------------------------361 --------------------------------------------------------------------------------------------------------------------------------------------------------------6----1------2--2-1------------8-----4---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 291 STR:RPRED 92.4 SQ:SECSTR EEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccEEEcccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccTTcHHHHHHHHTcccTTccEEEEEEEcccccccccEEEEEcTTcccEEEEEEcHHHHHcHHHHHEEccGGGccccTHHHHHHHTTcTTcEEEEccccEEEETTEEEccEEEEEEEGGGcTTccTTcEEEEEccHHHHHHHHHHTccEEEEEGGGcHcTTTcTTcEEEEccTTcccEEEEEEEETccccHHHHHHHHHHcTTc######################## DISOP:02AL 80-91,314-316| PSIPRED cccHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccccEEcccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEEcccccccEEEEEEEcccEEEEEccccHHHcccccHHHHccccEEEEcccccHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHcccEEHHHHHHHHHHHHccEEEEEccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccc //