[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39104.1
DDBJ      :             short-chain dehydrogenase/reductase SDR
Swiss-Prot:             

Homologs  Archaea  53/68 : Bacteria  846/915 : Eukaryota  194/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:290 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->55 1xseA PDBj 7e-05 25.9 %
:BLT:PDB   34->272 1w6uB PDBj 5e-45 42.4 %
:RPS:PDB   6->254 1dohB PDBj 2e-35 23.9 %
:RPS:SCOP  7->266 1bdbA  c.2.1.2 * 5e-37 21.2 %
:HMM:SCOP  7->251 1zemA1 c.2.1.2 * 1.3e-61 32.1 %
:RPS:PFM   10->178 PF00106 * adh_short 2e-14 34.1 %
:HMM:PFM   12->177 PF00106 * adh_short 5.4e-23 26.9 160/167  
:BLT:SWISS 1->279 DECR_RAT 7e-56 40.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39104.1 GT:GENE ABE39104.1 GT:PRODUCT short-chain dehydrogenase/reductase SDR GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(2092970..2093842) GB:FROM 2092970 GB:TO 2093842 GB:DIRECTION - GB:PRODUCT short-chain dehydrogenase/reductase SDR GB:PROTEIN_ID ABE39104.1 GB:DB_XREF GI:91682802 InterPro:IPR002198 InterPro:IPR002347 LENGTH 290 SQ:AASEQ MFTDQLLAGRRILVTGGGTGLGKSMAARFLQLGAEVHICGRRKGVCDETATELMDAYGGKVMTYGVDIRDAGAVDHMVETIFSGGPLTDLINNAAGNFISRTEELSPRGFDAVANIVMHGTFYVTHAVGKRWIEGGHRGNVVSITTTWVRNGSPYVVPSAMSKSAIHAMTMSLATEWGRYGIRLNTIAPGEIPTEGMSKRIKPGDEAGARTVKMNPMGRVGTMEELQNVAVFLISGGCDWINGETIAMDGAQGLAMGGNFYQLRDWSNADWDQAKASIKAQNEKDRAQRG GT:EXON 1|1-290:0| BL:SWS:NREP 1 BL:SWS:REP 1->279|DECR_RAT|7e-56|40.9|279/335| BL:PDB:NREP 2 BL:PDB:REP 2->55|1xseA|7e-05|25.9|54/274| BL:PDB:REP 34->272|1w6uB|5e-45|42.4|229/286| RP:PDB:NREP 1 RP:PDB:REP 6->254|1dohB|2e-35|23.9|247/271| RP:PFM:NREP 1 RP:PFM:REP 10->178|PF00106|2e-14|34.1|167/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 12->177|PF00106|5.4e-23|26.9|160/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 7->266|1bdbA|5e-37|21.2|255/267|c.2.1.2| HM:SCP:REP 7->251|1zemA1|1.3e-61|32.1|243/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 10551 OP:NHOMOORG 1093 OP:PATTERN 112123478676667518-311116117354821---------21-42--422-23223134733-34 EFO3O11355923-QhaFG-Fd33Y*FEFFFOdiokRk**5X5xK9752961JBE326--BBL3ECIJQI911111121186L11322454626121--73I4ABV8Q6G11111111111111232133311482CAADD222EA769A2132311-1-5332518B7L311111111111198655441D7GDDDDEEDGBEFEFGEJDGGFIDEEAEHKGC7555554FV7444443344444438896961916615---565567553566333545332323322222232222233333343333313311133354356B555444454754662575632-168222A612212433335542282CW99I11-11G5qVR457QJNNKBBDAA9CCDCO-BFMCBVCJOiS1pWWITQYsmldfNV9GBIHMIDFIFBF66666666GKKA45B61111111111-12132-1112211111116BWrH4DUPHQmZegghEEDEEVVlpHGHG8FxOrLogW37MLFFABCBMHVFYT7B4253584-------125F935E6331111-322214552B33635467HK342212222222123222222212221447666BA95IA3499896CBA885867776C---223711----ABEA5D68898888888-9888878999978988989JLKB76787567778788767677M7857768118888888888881-1434232688628FIE111526-2222-341EFGJF4D485G7JKEJEHLTDCEEFEGEG3111121112444F323329A578CCDCFBA99B54441-21666544--------1-3----------1--------------3342165676291 1111557-211-3AAQXNMTOXMiXiVFF7CACFGB9KCHBHIADDNMKMMVvfJOMECGDG78C1462611887111114887B818-FRGXCTBA89AB88EE9-6I6*9LDDF54432483D6363FY7-76B24568449424235A22A5868JYVH6PLD876BEBPFA3553g1226DBGChMWAABF8867 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 290 STR:RPRED 100.0 SQ:SECSTR GccGGccTTcEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTTcccEEEEEccGGGTcccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEcccccHHHHHHGGGGcTTHHHHHHccTTcccccHHHHHHHHHHHHcGGGTTccccEEEEccccccccccHHHHccTHcEEHHHHHHHHHHTHHHHHHHHTT DISOP:02AL 1-5,276-291| PSIPRED ccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccEEEEEccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHccccccEEEEcccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcc //