[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39108.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  652/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:293 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   2->269 3fzvC PDBj 1e-12 25.2 %
:RPS:PDB   1->67 1b9mA PDBj 3e-13 12.1 %
:RPS:PDB   91->291 1al3A PDBj 6e-21 18.8 %
:RPS:SCOP  1->104 1b9mA1  a.4.5.8 * 1e-12 10.6 %
:RPS:SCOP  91->292 1i69A  c.94.1.1 * 2e-23 15.5 %
:HMM:SCOP  1->112 1b9mA1 a.4.5.8 * 7.8e-26 41.0 %
:HMM:SCOP  82->295 1uthA_ c.94.1.1 * 1.8e-37 26.7 %
:RPS:PFM   3->61 PF00126 * HTH_1 3e-06 47.5 %
:RPS:PFM   91->275 PF03466 * LysR_substrate 1e-14 30.2 %
:HMM:PFM   87->291 PF03466 * LysR_substrate 2.5e-42 28.2 202/209  
:HMM:PFM   3->62 PF00126 * HTH_1 1.3e-23 51.7 60/60  
:BLT:SWISS 1->271 CYSL_BACSU 2e-30 30.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39108.1 GT:GENE ABE39108.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(2099395..2100276) GB:FROM 2099395 GB:TO 2100276 GB:DIRECTION - GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABE39108.1 GB:DB_XREF GI:91682806 InterPro:IPR000847 InterPro:IPR005119 LENGTH 293 SQ:AASEQ MTLEQLRIFIAVAEQQHMTRAASGLNLTQSAASAAIAALESRYDVKLFDRVGRGIALTQAGREFLDEARAVVARARAAAKALDDLAGLKRGALSLAVSQTIGNYWLPPRLLDFQRTYPGIELQVSITNTEQVARAVREGRADLGLVEGEVDDSSLASRRIDGDSLAVVVGKRHPWVGQTRISASKLMTTGWVLRERGSGTRSIFEAALHNAGVDPSHLDVKLELPSNEAVRTAIECSDYAAAISDLVAAPSLAAATLHRVQFDLPRRSFFVLRHKEHSDVRPVNALLKSLQTD GT:EXON 1|1-293:0| BL:SWS:NREP 1 BL:SWS:REP 1->271|CYSL_BACSU|2e-30|30.2|268/299| SEG 30->38|saasaaiaa| SEG 68->90|aravvararaaakalddlaglkr| BL:PDB:NREP 1 BL:PDB:REP 2->269|3fzvC|1e-12|25.2|250/279| RP:PDB:NREP 2 RP:PDB:REP 1->67|1b9mA|3e-13|12.1|66/255| RP:PDB:REP 91->291|1al3A|6e-21|18.8|197/237| RP:PFM:NREP 2 RP:PFM:REP 3->61|PF00126|3e-06|47.5|59/60|HTH_1| RP:PFM:REP 91->275|PF03466|1e-14|30.2|182/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 87->291|PF03466|2.5e-42|28.2|202/209|LysR_substrate| HM:PFM:REP 3->62|PF00126|1.3e-23|51.7|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->104|1b9mA1|1e-12|10.6|104/122|a.4.5.8| RP:SCP:REP 91->292|1i69A|2e-23|15.5|193/206|c.94.1.1| HM:SCP:REP 1->112|1b9mA1|7.8e-26|41.0|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 82->295|1uthA_|1.8e-37|26.7|210/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 3522 OP:NHOMOORG 667 OP:PATTERN -----------------------------------11111111----------1-------------- 4452512155511144311-111129111112-22257EE-23421121--13442----2---1395652--------1125211112221-1-----1-5-1-212-2---------------1---1----1-45533---21432544522331111113336645211111111111111------43988888A874689BA751999C889233923-555555GQ----1----------333231-22222----21--21-11-11-----------11-----------------------------------43784444454342164432216211-6332165532212631121--2-22422------34B8D4235865444534454457-22424738371-D5536449E8879822232A23351723233333343343256-----------------------------1-65-17QJEGPSSSVRDECDDMMKODDDDBFYJQKQRO-1JFB48A99O8K4JA6A843128511212-222157922112131136223-212334321432344131--1-1111-1----------3112986451337232345444154655874348561-11127------87775A67776765587-7767865866768666767FGC693558775898887858558A56455562-745455445555---4-1-11----1257C2221111111111118788953353F3GHIHGJHN5JKKH5EDG121-11212445585555576788577A9AB5541111--2-11------------1-------------------------------------241 --------------------------------------------------------------------------------------------------------------------------------------------------------------6----------------1--------11--5-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 293 STR:RPRED 100.0 SQ:SECSTR HHHHHHHHHHHHTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEcTTccccEEEcHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHEEEEEEEcHHHHHHTcHHHHHHHHHHcTEEEEEEEEccHHHHHHHHHTTcccEEEEccccTTccEEEEEEEEEcEEEEEcTTcTTTTTccccHHHHHTcEEEEEcTTcTTHHHHHHHHHHHTcccHccEEEEEEccHHHHHHHHHHTccEEEEEGGHGccTTTcTTcEEEcTTcccEEEEEEEETTccccHHHHHHHHHHcHH PSIPRED ccHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHccccEEEEEccccccccEEEEEEEcccEEEEEcccccccccccccHHHHccccEEEcccccHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHccccEEEEHHHHHHHHHccccEEEEccccccEEEEEEEcccccccHHHHHHHHHHHcc //