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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39183.1
DDBJ      :             polysaccharide deacetylase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  314/915 : Eukaryota  58/199 : Viruses  0/175   --->[See Alignment]
c.6.2
:348 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   127->315 2c1gA PDBj 1e-25 36.5 %
:RPS:PDB   122->305 2cc0A PDBj 7e-36 28.5 %
:RPS:SCOP  90->305 1ny1A  c.6.2.3 * 3e-46 25.0 %
:HMM:SCOP  122->305 1ny1A_ c.6.2.3 * 6.9e-44 34.6 %
:RPS:PFM   127->224 PF01522 * Polysacc_deac_1 5e-16 42.7 %
:HMM:PFM   125->235 PF01522 * Polysacc_deac_1 3.6e-26 35.8 109/124  
:HMM:PFM   321->336 PF11591 * 2Fe-2S_Ferredox 0.00039 62.5 16/34  
:HMM:PFM   295->319 PF11025 * GP40 0.00098 48.0 25/165  
:BLT:SWISS 127->304 NODB_RHILO 4e-21 33.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39183.1 GT:GENE ABE39183.1 GT:PRODUCT polysaccharide deacetylase GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(2186339..2187385) GB:FROM 2186339 GB:TO 2187385 GB:DIRECTION - GB:PRODUCT polysaccharide deacetylase GB:PROTEIN_ID ABE39183.1 GB:DB_XREF GI:91682881 InterPro:IPR002509 LENGTH 348 SQ:AASEQ MRKVVALTAGCSALAVLVGLGAGRAYFSAPSAQTVAASSELTTGAIASRWPTPTSESSKAPAPTIQPAVAREPAAMPAPAPAPAPVQACNNPDALGISRTVEIDTNGGPGLGMSQYRDYDFLQPGEVALTFDDGPWPVNTPAVLAALAAQCVKAVFFPIGKHASWHPAILKQVVAAGHTVGSHTWSHVNLATKPFADAKTEIEKGISGVALSAGQPTSPFFRFPQLRQTQDLKAYLGERNIATFSIDIDSEDFRIHKPDQLITAVMTKLKKAGKGILLMHDFQQSTAQALPELLAQLKAGGYKIVFITAKDKVNTLPEYDAQVAPAQPAVSNARPIGNVIRTVGGNAK GT:EXON 1|1-348:0| BL:SWS:NREP 1 BL:SWS:REP 127->304|NODB_RHILO|4e-21|33.0|176/219| TM:NTM 1 TM:REGION 4->23| SEG 67->88|pavarepaampapapapapvqa| BL:PDB:NREP 1 BL:PDB:REP 127->315|2c1gA|1e-25|36.5|181/384| RP:PDB:NREP 1 RP:PDB:REP 122->305|2cc0A|7e-36|28.5|179/192| RP:PFM:NREP 1 RP:PFM:REP 127->224|PF01522|5e-16|42.7|96/123|Polysacc_deac_1| HM:PFM:NREP 3 HM:PFM:REP 125->235|PF01522|3.6e-26|35.8|109/124|Polysacc_deac_1| HM:PFM:REP 321->336|PF11591|0.00039|62.5|16/34|2Fe-2S_Ferredox| HM:PFM:REP 295->319|PF11025|0.00098|48.0|25/165|GP40| GO:PFM:NREP 2 GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF01522|IPR002509| GO:PFM GO:0016810|"GO:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"|PF01522|IPR002509| RP:SCP:NREP 1 RP:SCP:REP 90->305|1ny1A|3e-46|25.0|216/235|c.6.2.3| HM:SCP:REP 122->305|1ny1A_|6.9e-44|34.6|182/0|c.6.2.3|1/1|Glycoside hydrolase/deacetylase| OP:NHOMO 799 OP:NHOMOORG 372 OP:PATTERN -------------------------------------------------------------------- 231-611-------21111-11111111111111111---1211-1--1---12------1132-1-5753-222----211------1112-1------1222-212-1--------------------------12212111--21-111-12--------1-112242------------122-----34376767677477778723227277843572221111117B--------------------1-1--------------1-----11211111111--111111111111111111111111111---111112476555555514245444111422--51241225323222322321--2--1--------1164442344443-----------------2---11-111-2211221143----1------1--------------2---------------------------1111--11-1-----1------------12--------1111----1--1----1111----1--------------11112-------1--111--1-------11---1---------------------------11------1----------------------1-------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------11111111111111---------------------------------------------------1-1-11-1 ------------AA2-13521111211------322--------1-222242225652323311-1--11111-1121121----------1131----1-1-5-2-----------------------------------------------------------------------------------4--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 248 STR:RPRED 71.3 SQ:SECSTR ########################################################################################cccccccccTTcccGGTcccccccccccTTccccccEEEEEEEEccccTHTHHHHHHHHHHTTcccEEEEcHHHHHHcHHHHHHHHHTTcEEEEcccccccGGGccHHHHHHHHHHHHHHHHHHTTcccccEEccGGGcccHHHHHHHHHTTcEEccccEEccGGGTccHHHHHHHHHHTccTcTTcEEEEEcccHHHHHHHHHHHHHHHHTTEEEccTTccTTcccHHHHHHHTccccTTccccccc############ DISOP:02AL 1-2,51-69,325-333,347-349| PSIPRED ccEEEEEEccHHHHHHHHHHcccHHcccccccccccHHHcccHHHHHHccccccccHHccccccccccccccccccccccccccccccccccccccccHHHcccccccccccHHHccccccccccEEEEEEccccccccHHHHHHHHHHccccEEEEEcHHHHHHcHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEcHHHcccccccccHHHcccccccccccccccEEEEcccccc //