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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39263.1
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  367/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:260 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   72->249 3fmsA PDBj 7e-09 26.0 %
:RPS:PDB   74->252 1e2xA PDBj 3e-21 14.0 %
:RPS:SCOP  74->117 1e2xA1  a.4.5.6 * 2e-09 31.8 %
:RPS:SCOP  88->253 1e2xA2  a.78.1.1 * 9e-17 9.7 %
:HMM:SCOP  37->141 1v4rA1 a.4.5.6 * 4.3e-13 31.0 %
:RPS:PFM   67->111 PF00392 * GntR 2e-05 48.9 %
:RPS:PFM   121->243 PF07729 * FCD 2e-07 31.1 %
:HMM:PFM   121->244 PF07729 * FCD 4.6e-22 27.6 123/125  
:HMM:PFM   49->111 PF00392 * GntR 9.4e-16 41.7 60/64  
:BLT:SWISS 72->260 YIN1_STRAM 1e-13 30.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39263.1 GT:GENE ABE39263.1 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(2275006..2275788) GB:FROM 2275006 GB:TO 2275788 GB:DIRECTION - GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID ABE39263.1 GB:DB_XREF GI:91682961 InterPro:IPR000524 InterPro:IPR011711 InterPro:IPR013196 LENGTH 260 SQ:AASEQ MPVEPQTSSFLDLHGRSMVARARTSSMDPMAEPNLAITPLAPEASYKAKAYQALKQAILKMDIYTTPEPVMLDERALSDKLGVSRTPIREAIAMLEQDGLVKAVPRRGIIVVRRTKAEIVDMIRAWAALESMAARLITTMARKRDITALRDVFKAFGPDHLPQDYIEEYSRANIVFHQALISLSESQVLVDMTNDILLHVRGYRQLTIGRKERIAASLPEHLAMIEAMEERDTELAEKLARDHTLRLAAYVEAHGQELFA GT:EXON 1|1-260:0| BL:SWS:NREP 1 BL:SWS:REP 72->260|YIN1_STRAM|1e-13|30.1|186/236| SEG 46->60|ykakayqalkqailk| BL:PDB:NREP 1 BL:PDB:REP 72->249|3fmsA|7e-09|26.0|169/206| RP:PDB:NREP 1 RP:PDB:REP 74->252|1e2xA|3e-21|14.0|179/222| RP:PFM:NREP 2 RP:PFM:REP 67->111|PF00392|2e-05|48.9|45/64|GntR| RP:PFM:REP 121->243|PF07729|2e-07|31.1|122/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 121->244|PF07729|4.6e-22|27.6|123/125|FCD| HM:PFM:REP 49->111|PF00392|9.4e-16|41.7|60/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 74->117|1e2xA1|2e-09|31.8|44/73|a.4.5.6| RP:SCP:REP 88->253|1e2xA2|9e-17|9.7|144/149|a.78.1.1| HM:SCP:REP 37->141|1v4rA1|4.3e-13|31.0|100/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 831 OP:NHOMOORG 377 OP:PATTERN ------1-11-11111----------------------------------------------1----- ---121111121---11--------5-------2223-34-1-11----1--675-------2--242-2----------1-2-----------------------------------------------------12231----2-----------------------1---------------111-1-2-11111111111-11--3-2211111----11-------23--------------------------------------------------111-11-----------------1----------------232-2----------23------212---1212221211---1---2------1--------12966--32124122222222125-56555A57321-92252348476584---3551134424111111112111-2-1--------------------------------2--177363231321----33BB11--1-41C89991311-6222252B173242----1-----------212--1-1-1---1111-2121211-1-------2------------------------------112212132222212222221222231----1----------21---11-1111111-111111111111111111121222-1-1-11111111111111-1-11111----------------------------1243---------------23233121--2-23223244245431323-------------111111121121122122-----------------------------------------------------------3------ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 193 STR:RPRED 74.2 SQ:SECSTR ##################################################################EEEccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTEEEEEccHHHHccGGGHHHHHHHcTTTHHHHHHHHHHHHHHcHHHHHHHHHGGGTccccHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHTcGGGHHHHHHHHHHHHHHHHHHHHHHcE# DISOP:02AL 1-6,20-32,260-261| PSIPRED ccccccHHHHHHHccHHHHHHcccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcc //