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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39278.1
DDBJ      :             TIM-barrel protein, yjbN family
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  772/915 : Eukaryota  161/199 : Viruses  0/175   --->[See Alignment]
c.1.4
:317 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   47->285 1vhnA PDBj 2e-13 27.4 %
:RPS:PDB   42->289 3dwjA PDBj 2e-35 10.4 %
:RPS:SCOP  4->290 1vhnA  c.1.4.1 * 1e-55 23.7 %
:HMM:SCOP  1->290 1vhnA_ c.1.4.1 * 4.4e-67 39.6 %
:RPS:PFM   12->290 PF01207 * Dus 3e-46 43.1 %
:HMM:PFM   1->294 PF01207 * Dus 1.9e-83 39.2 283/310  
:BLT:SWISS 1->309 DUSA_VIBVU e-101 56.8 %
:PROS 77->95|PS01136|UPF0034

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39278.1 GT:GENE ABE39278.1 GT:PRODUCT TIM-barrel protein, yjbN family GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 2291255..2292208 GB:FROM 2291255 GB:TO 2292208 GB:DIRECTION + GB:PRODUCT TIM-barrel protein, yjbN family GB:PROTEIN_ID ABE39278.1 GB:DB_XREF GI:91682976 InterPro:IPR001269 InterPro:IPR003009 InterPro:IPR004653 LENGTH 317 SQ:AASEQ MMEWTDTRCRVFHRLLTRRGRLYTEMLTCGAVIRGDRQRLLGFDASEHPVALQLGGSNPADLATAATIGEDFGYDEINLNVGCPSDRVKEGRFGACLMAEPMLVADCVAAMKRAVTIPVTVKCRIGIDDQDPETALDNLAQSVVAAGVDALIVHARKAWLNGLSPKENRDIPPLDYDRVYRLKRAMPAVPIIINGGITSIAQAKQHLAYVDGVMLGRAAYQEPWRLLDVDPELFGEAAPHATMKDALEALMPYIEDQLAQGVRLHAITRHLIGAYQGVPGARAFRRYLSEFGVKPDADVSVLAKAMVAVGERTSEAA GT:EXON 1|1-317:0| BL:SWS:NREP 1 BL:SWS:REP 1->309|DUSA_VIBVU|e-101|56.8|308/326| PROS 77->95|PS01136|UPF0034|PDOC00874| BL:PDB:NREP 1 BL:PDB:REP 47->285|1vhnA|2e-13|27.4|223/299| RP:PDB:NREP 1 RP:PDB:REP 42->289|3dwjA|2e-35|10.4|241/408| RP:PFM:NREP 1 RP:PFM:REP 12->290|PF01207|3e-46|43.1|267/303|Dus| HM:PFM:NREP 1 HM:PFM:REP 1->294|PF01207|1.9e-83|39.2|283/310|Dus| GO:PFM:NREP 4 GO:PFM GO:0008033|"GO:tRNA processing"|PF01207|IPR001269| GO:PFM GO:0017150|"GO:tRNA dihydrouridine synthase activity"|PF01207|IPR001269| GO:PFM GO:0050660|"GO:FAD binding"|PF01207|IPR001269| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01207|IPR001269| RP:SCP:NREP 1 RP:SCP:REP 4->290|1vhnA|1e-55|23.7|270/305|c.1.4.1| HM:SCP:REP 1->290|1vhnA_|4.4e-67|39.6|273/305|c.1.4.1|1/1|FMN-linked oxidoreductases| OP:NHOMO 1763 OP:NHOMOORG 938 OP:PATTERN -------------------------------------------------1111--------------1 111-11-111111---1-----11------------1-------11111111111111--1---111111-11111111-11-1----111111111--111111211111111111111111121111111111111111---1-221122211112212222211222122122222221222211--1111111111111111111111111111-112-12-----111111-------111-------21-111111113311111111111111111----11-----------1111111111111-1111111111111111111111111111111111111-11111111-111111111-121-2211211111222222221221222222222222-11221111212122222222222222222222212222211111111111111121111111111111111111-1111111111111112222222222212222223222222222333322233322212333121222111133333333311112222212111-11111-222121222----21111111111111-11-1-----1111111333333323233333333333333333333--21212--1---33333333333333333-3333333333333333333333333333333333333333333322233331-333333333333--121111122222323333333332332333333333333323333333333333333333222222222233333233233333222222222211111-1133222222222222111----1---1--------1--------1111111-1-22 2222344-513-232-11-----1-1-1111111-11111111111--111111--1-111-2112-1112211111-2--1112222-131132321-2--266423937253324--1-13152-2-6F3-22311--3-2221-11-5--51552435713231222234342443J5653263531448433334 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 312 STR:RPRED 98.4 SQ:SECSTR HHHHHHHTTcEEEEEEEccGGEGcccTTTccccEEccccccccccccccGGGccccccHHHHHHHHHHHHHHHHTTcccccHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHTcTTcTTGGGTTccEEEEcTTcccHHHHHHHHHHHHHHHHGGGccccEEEEccccccccccHHHcEEcccccccccEEccTcccEEcGGGHHHHHHHHHTTccccccccccccEEEEcTTcccccEEEcccTTTccEEEccccccGGGGGGccEEEccccEEcccEEEETTccEEEEccccccHHHHccHHHH##### DISOP:02AL 313-318| PSIPRED ccccccHHHHHHHHHHHHHccEEccccccHHHHcccHHHHHcccccccEEEEEEEcccHHHHHHHHHHHHHccccEEEEccccccHHHHcccccHHHcccHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHHccccHHHEEHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccc //