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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39339.1
DDBJ      :             Substrate-binding region of ABC-type glycine betaine transport system
Swiss-Prot:             

Homologs  Archaea  16/68 : Bacteria  484/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.94.1f.58.1
:519 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   92->158 2onkC PDBj 4e-04 35.8 %
:BLT:PDB   257->485 1sw4A PDBj 4e-43 40.2 %
:RPS:PDB   124->159 3dhwA PDBj 3e-14 38.9 %
:RPS:PDB   401->467 3chgA PDBj 1e-08 23.9 %
:RPS:SCOP  96->194 2r6gG1  f.58.1.1 * 5e-13 21.2 %
:RPS:SCOP  257->485 1sw1A  c.94.1.1 * 1e-68 39.3 %
:HMM:SCOP  254->513 1sw5A_ c.94.1.1 * 1.9e-52 35.7 %
:RPS:PFM   97->177 PF00528 * BPD_transp_1 4e-05 33.3 %
:RPS:PFM   255->463 PF04069 * OpuAC 7e-25 40.4 %
:HMM:PFM   255->510 PF04069 * OpuAC 8.5e-52 36.3 234/257  
:HMM:PFM   40->219 PF00528 * BPD_transp_1 3.4e-18 25.9 170/185  
:BLT:SWISS 53->174 OPUCB_BACSU 4e-23 48.1 %
:BLT:SWISS 251->485 OPUCC_BACSU 4e-22 29.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39339.1 GT:GENE ABE39339.1 GT:PRODUCT Substrate-binding region of ABC-type glycine betaine transport system GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(2354768..2356327) GB:FROM 2354768 GB:TO 2356327 GB:DIRECTION - GB:PRODUCT Substrate-binding region of ABC-type glycine betaine transport system GB:PROTEIN_ID ABE39339.1 GB:DB_XREF GI:91683037 InterPro:IPR000515 InterPro:IPR007210 LENGTH 519 SQ:AASEQ MSVFSDPRWTEALANLPDYLGSHVRVSVAALGLGLAVSLPLAILARHRPVLRGALLGFAGIVQTIPGLALLALFYPLLLALAALSASTLGVSFSAFGFLPAVLALALYSMLPVLRNTITGLAGVDPALIEAAQGVGMTPRQTLTMVELPLALPVIMAGIRTSAVWVIGTATLSTPIGQTSLGNYIFAGLQTQNWVLVLFGCAAAAVLALAVDQLLALIETGLRLRSRLRVALGGLGLAALVIATLAPSLASSKSTYVVGAKTFTEQYVLAALIAQQLDDRGLPATIRAGLGSSVIYDALKSGDIDAYVDYSGTLWANQFHHPGIAARDQVLSDLKGDLGRDGVTLLGELGFANAYALVMPRARAEALGVRSIADLAARAPQMTIAGDYEFFSRPEWAELRRTYGLSFKTERQMQPDFMYAAVASGEVDLIAGYTSDGLIAKYDLVVLDDPRQAIPPYDAVLLVSPKRAGDTKLRDALSPLVGRIDIAAMRAANLRAASGGGTGTPDVVARALWDSVKPR GT:EXON 1|1-519:0| BL:SWS:NREP 2 BL:SWS:REP 53->174|OPUCB_BACSU|4e-23|48.1|106/217| BL:SWS:REP 251->485|OPUCC_BACSU|4e-22|29.8|235/303| TM:NTM 6 TM:REGION 23->45| TM:REGION 57->79| TM:REGION 91->113| TM:REGION 147->169| TM:REGION 197->219| TM:REGION 229->251| SEG 24->42|vrvsvaalglglavslpla| SEG 68->89|lallalfyplllalaalsastl| SEG 195->217|vlvlfgcaaaavlalavdqllal| SEG 221->246|glrlrsrlrvalgglglaalviatla| SEG 487->497|aamraanlraa| BL:PDB:NREP 2 BL:PDB:REP 92->158|2onkC|4e-04|35.8|67/252| BL:PDB:REP 257->485|1sw4A|4e-43|40.2|229/270| RP:PDB:NREP 2 RP:PDB:REP 124->159|3dhwA|3e-14|38.9|36/203| RP:PDB:REP 401->467|3chgA|1e-08|23.9|67/258| RP:PFM:NREP 2 RP:PFM:REP 97->177|PF00528|4e-05|33.3|81/195|BPD_transp_1| RP:PFM:REP 255->463|PF04069|7e-25|40.4|193/256|OpuAC| HM:PFM:NREP 2 HM:PFM:REP 255->510|PF04069|8.5e-52|36.3|234/257|OpuAC| HM:PFM:REP 40->219|PF00528|3.4e-18|25.9|170/185|BPD_transp_1| GO:PFM:NREP 6 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| GO:PFM GO:0005215|"GO:transporter activity"|PF04069|IPR007210| GO:PFM GO:0005488|"GO:binding"|PF04069|IPR007210| GO:PFM GO:0006810|"GO:transport"|PF04069|IPR007210| RP:SCP:NREP 2 RP:SCP:REP 96->194|2r6gG1|5e-13|21.2|99/284|f.58.1.1| RP:SCP:REP 257->485|1sw1A|1e-68|39.3|229/271|c.94.1.1| HM:SCP:REP 254->513|1sw5A_|1.9e-52|35.7|258/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 1280 OP:NHOMOORG 502 OP:PATTERN -----------------------3--------1--1--11111-311--4114-------4------- 2-2-2111----4-411----5--44-----315556577-----1322122522234--43--543856----------1-6-------11-2-----------1-11---------------------------1--22---2-311211122-----------12221-1-----1----311-------72222222212222225-4457222222242144444414433333343333333466355-41451-1-144225551411-222555221215511111111111222222222222221122-1112-114311111111111222111112---3----2211--33-32----11---1--1------111111-1111144444444444-33-22112331-8552447735981---1--721111-1---------------3------------------------------1-1--111113776656333244123333237444544--112--1111-5327-------5---------------13--4111-2--1----------1-1121-------------1-1111111-------11----1---2----------------------111-------7511-512222222222-2222222222222222225242111115545555555555555422222221-233333323333----11111------38-----11-----------------11--4444544433433-544-----------11-------11----11111111----------------------------------------------------4---------- -------------1-----------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 304 STR:RPRED 58.6 SQ:SECSTR ###########################################################################################TTcccccHHHHHHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHH##########################################################################################cccTccEEEEEccHHHHHHHHHHHHHHHHTTcccEEEEEcccHHHHHHHHHTTccccEEEcHHHHHHHHcTTccEEEEEEEcEEEcTTTccEEEEEEEEEccccEEcEEEEEEEEEcccccHHHHHTcEcEEEEEcccTTcHHHHHHHHHHHHTTcTTccEEcccHHHHHHHHHTTccccEEEEcccTHHHHccEEEcccTTcTTcccEEEEEEEETTHHHHcHcHHHGGGTTccc################################## DISOP:02AL 1-1,519-520| PSIPRED ccccccccHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHccccEEEEEccHHHHHHHccccccccHHHHHHHHHHHHHHcccEEEccccccccEEEEEcHHHHHHHccccHHHHHHccccEEEEEcHHHccccccccHHHHHcccccccccccHHHHHHHHHccccEEEEEEcccHHHHHcccEEEEccccccccccHHEEEcHHHHccHHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHccccc //