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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39424.1
DDBJ      :             RNA binding S1
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  597/915 : Eukaryota  172/199 : Viruses  0/175   --->[See Alignment]
a.294.1a.60.2b.40.4c.55.3
:798 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   48->747 2oceA PDBj 0.0 58.9 %
:RPS:PDB   26->751 3bzkA PDBj e-149 60.1 %
:RPS:SCOP  26->344 2oceA3  a.294.1.1 * 9e-98 52.8 %
:RPS:SCOP  345->493 2oceA5  c.55.3.13 * 8e-42 71.1 %
:RPS:SCOP  494->583 2oceA1  a.60.2.6 * 1e-21 70.0 %
:RPS:SCOP  584->656 2oceA2  a.60.2.6 * 2e-27 67.1 %
:RPS:SCOP  646->745 1jjgA  b.40.4.5 * 8e-17 10.1 %
:HMM:SCOP  653->750 1wi5A_ b.40.4.5 * 1.9e-25 38.1 %
:RPS:PFM   31->225 PF09371 * Tex_N 1e-59 64.2 %
:RPS:PFM   672->717 PF00575 * S1 1e-07 43.5 %
:HMM:PFM   31->223 PF09371 * Tex_N 1.7e-78 58.1 191/193  
:HMM:PFM   672->744 PF00575 * S1 2.8e-22 43.8 73/74  
:HMM:PFM   518->567 PF03934 * GspK 6.3e-05 28.6 49/280  
:BLT:SWISS 26->745 Y568_HAEIN 0.0 57.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39424.1 GT:GENE ABE39424.1 GT:PRODUCT RNA binding S1 GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(2445730..2448126) GB:FROM 2445730 GB:TO 2448126 GB:DIRECTION - GB:PRODUCT RNA binding S1 GB:PROTEIN_ID ABE39424.1 GB:DB_XREF GI:91683122 InterPro:IPR003029 InterPro:IPR006641 LENGTH 798 SQ:AASEQ MPSIRRACGDHIDLLAHPFERPSVPKIASVIATELAVREEQVQAAIDLLDGGSTVPFIARYRKEATGMLDDSQLRTLEERLSYLREMDARRITIIDSIKQQGKLTPEIEKALLAADTKARLEDIYLPFKEKRRTKAQIAREAGLEPLAEMLLLNPDKHPETEAAAYVKTDGEHPVADVKAALEGARSILVERFSEHADLTGSLREAMWSRGQIKASVRDGKKTSGAKFADYFDFSEPYEKLPSHRILALLRGEKEEVLALDFGDGEDPDSKEPTQYENRIAATFSISRKGRPADSFLSDCVRWAWRTRIKTGLALDMRMRLWQQAEKEAVRVFAANLRDLLLAAPAGGRATLGLDPGFRTGVKVAVIDQTGKFVDHTTIYPHEPARKWNESMFELAQLCVKHRIELVAIGNGTASRETEKLVADLMKLKPELKLTKAIVSEAGASVYSASEFASKEFPDLDVSIRGAVSIARRLQDPLGELVKVPPQSIGVGQYQHDLNQYTLSRALDATVEDCVNAVGVDLNTASAPLLARVSGIGDTLATNIVAHRDANGPFPSRAKLKEVPRLGPKAFEQCAGFLRIRDGENPLDASGVHPEAYPLVKKILAATKSDIKALIGQTSKLKSLQPASFADDKFGIPTVTDILKELEKPGRDPRPEFKTATFQEGVEKITDLKPGMILEATITNVAAFGAFADIGVHQDGLIHISAMSERRINDPREVVKPGQVVKVKVLEVDVPRNRIGLTLRLADPIPAAGERRQSGGGGNAKLVERHRPRPEPAGGGALAAALAKAAESSKNRSK GT:EXON 1|1-798:0| BL:SWS:NREP 1 BL:SWS:REP 26->745|Y568_HAEIN|0.0|57.8|714/762| SEG 718->734|vvkpgqvvkvkvlevdv| SEG 774->794|pepagggalaaalakaaessk| BL:PDB:NREP 1 BL:PDB:REP 48->747|2oceA|0.0|58.9|696/729| RP:PDB:NREP 1 RP:PDB:REP 26->751|3bzkA|e-149|60.1|720/728| RP:PFM:NREP 2 RP:PFM:REP 31->225|PF09371|1e-59|64.2|193/193|Tex_N| RP:PFM:REP 672->717|PF00575|1e-07|43.5|46/74|S1| HM:PFM:NREP 3 HM:PFM:REP 31->223|PF09371|1.7e-78|58.1|191/193|Tex_N| HM:PFM:REP 672->744|PF00575|2.8e-22|43.8|73/74|S1| HM:PFM:REP 518->567|PF03934|6.3e-05|28.6|49/280|GspK| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 5 RP:SCP:REP 26->344|2oceA3|9e-98|52.8|316/323|a.294.1.1| RP:SCP:REP 345->493|2oceA5|8e-42|71.1|149/149|c.55.3.13| RP:SCP:REP 494->583|2oceA1|1e-21|70.0|90/90|a.60.2.6| RP:SCP:REP 584->656|2oceA2|2e-27|67.1|73/73|a.60.2.6| RP:SCP:REP 646->745|1jjgA|8e-17|10.1|99/102|b.40.4.5| HM:SCP:REP 653->750|1wi5A_|1.9e-25|38.1|97/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 880 OP:NHOMOORG 776 OP:PATTERN --------------------------------11----11111------------------------- 1-1-11111111111------1--11-----111111111-111--------111-----11--1111111---------1-------2111-1-----1111--111-1--------------1---------1-11111---21111111--------------1111----------------------11111111111111111111111111111111111111111111111111111111111111-1-11-1---11111111111-1111111111111111111111111111111111111111111---1-1111111111111111111111111111111-1111--11--11---111-2---------111111--11111--11--1-111-1111111111--1111111111111111---11111-11-------------11------------------------------------111111111111111111111111111111111-1111111111111111111---1111111111111111111-111-11111-111111111----11-11-------------------1---1--111111111111111111111111111111--1111-------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11-----11111111111111111111111111121111111111111111111111111----------1111111111111111111111111111--1---------------111------11--1----------1111-1111------1- --------211-1111111111111111111111111111111111111111111111111111-1-1-1111-111-1111111111-1111111111111-111-12-32323112212222422412C212232211212221221221121223223113262312B4231---19111--1--21-12-21111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 732 STR:RPRED 91.7 SQ:SECSTR #########################HHHHHHHHHHHTcTTccHHHHHHHHHTccHHHHHHHcHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHcccHHHHHHHHGGGccccccHHHHHHHTTTHHHHHHHHHcTTccHHHHHHTTccGGccGTcccHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHcEEEEEEcTTcTTTTGGGGGGTEEEEEGGGccHHHHHHHHHHHHTTcEEEEEEEcEccccccccHHHHHHHHHTTccccccTTHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccEEEEEcccTTcEEEEEEcTTccEEEEEEEcccTTTccHHHHHHHHHHHHHHTTccEEEEEccTTHHHHHHHHHHHHHHcGGGccEEEEEccTTHHHHHTcHHHHHHcTTccHHHHHHHHHHHHHHcHHHHHTTccGGGccccTTTTTccHHHHHHHHHHHHHHHHHHHcEETTTccHHHHTTcTTccHHHHHHHHHHHHHHccccccGGGGGcTTccHHHHHHHHTTEEcTTcccGGGGccccGGGHHHHHHHHHHTTccHHHHTTcHHHHHHccGGGTccccccHHHHHHHHHHHHcTTccccccccHHHHHHTcccGGGccTTcEEEEEEEEEETTEEEEEccccccEEEEGGGGcccccccHHHHccTTcEEEEEEEEEETTTTEEEEEccTTcGcccHHHHHH######################################### DISOP:02AL 1-6,221-222,745-781,788-799| PSIPRED cccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccEEEEEcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcEEEEEEEEccccHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHHEEEcccccccccccccccccHHHHHHHHHHcccHHHHHccHHHHHHHcHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEEEccccEEEEccccEEEEEHHHHHHHHcccHHHHcccccEEEEEEEEEEEcccEEcccHHHcccccccHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccc //