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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39673.1
DDBJ      :             N-acetylmuramoyl-L-alanine amidase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  627/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.56.5
:441 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   210->286 1jwqA PDBj 3e-12 45.5 %
:RPS:PDB   210->415 3czxA PDBj 2e-30 17.1 %
:RPS:SCOP  210->433 1jwqA  c.56.5.6 * 4e-38 34.1 %
:HMM:SCOP  208->433 1jwqA_ c.56.5.6 * 1.2e-49 42.1 %
:RPS:PFM   67->136 PF11741 * AMIN 3e-09 44.3 %
:RPS:PFM   211->426 PF01520 * Amidase_3 8e-24 42.8 %
:HMM:PFM   211->427 PF01520 * Amidase_3 2.1e-48 39.9 173/175  
:HMM:PFM   52->140 PF11741 * AMIN 3.6e-15 31.5 89/115  
:BLT:SWISS 67->431 AMIC_ECOLI 1e-45 34.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39673.1 GT:GENE ABE39673.1 GT:PRODUCT N-acetylmuramoyl-L-alanine amidase GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 2724526..2725851 GB:FROM 2724526 GB:TO 2725851 GB:DIRECTION + GB:PRODUCT N-acetylmuramoyl-L-alanine amidase GB:PROTEIN_ID ABE39673.1 GB:DB_XREF GI:91683371 InterPro:IPR002508 LENGTH 441 SQ:AASEQ MKRGRDSLSGRANHFVLFRAILACAAALLCAAPTAGVAGEAVATSAPAPTSFPIAAEVRLAGDDTQTRFVIDLDRTVPMRAFALADPYRVVIDLPQVNFRLPAASGGTGRGLIKAYRYGLVMPGGSRVVLELSGPAKITKADMLEAANGQPARMVIELGSVDRTAFVESLGVEKGPELRPAIGAADATSSVPHRVESPKLDAAKDDLRPVIVLDPGHGGIDNGTQSQSGVSEKALVLEFALALRDQMEKGGKYRVVLTRTDDTFIPLNDRVKIARAHSAALFVSIHADALPRGEGDAQGATIYTLSDKASDAEAQRLADAENKADAIGGVNLTEEPTEVADILIDLAQRETKTFSNRFAQTLMREMKSATRLHKQPLKSAGFRVLKAPDVPSVLLELGYVSNKGDLKQLVSEQWRTKTVGAVALAIDSFFAKRLVSAGKPD GT:EXON 1|1-441:0| BL:SWS:NREP 1 BL:SWS:REP 67->431|AMIC_ECOLI|1e-45|34.3|356/417| SEG 20->32|ailacaaallcaa| BL:PDB:NREP 1 BL:PDB:REP 210->286|1jwqA|3e-12|45.5|77/179| RP:PDB:NREP 1 RP:PDB:REP 210->415|3czxA|2e-30|17.1|158/178| RP:PFM:NREP 2 RP:PFM:REP 67->136|PF11741|3e-09|44.3|70/103|AMIN| RP:PFM:REP 211->426|PF01520|8e-24|42.8|173/175|Amidase_3| HM:PFM:NREP 2 HM:PFM:REP 211->427|PF01520|2.1e-48|39.9|173/175|Amidase_3| HM:PFM:REP 52->140|PF11741|3.6e-15|31.5|89/115|AMIN| GO:PFM:NREP 2 GO:PFM GO:0008745|"GO:N-acetylmuramoyl-L-alanine amidase activity"|PF01520|IPR002508| GO:PFM GO:0009253|"GO:peptidoglycan catabolic process"|PF01520|IPR002508| RP:SCP:NREP 1 RP:SCP:REP 210->433|1jwqA|4e-38|34.1|176/179|c.56.5.6| HM:SCP:REP 208->433|1jwqA_|1.2e-49|42.1|178/179|c.56.5.6|1/1|Zn-dependent exopeptidases| OP:NHOMO 865 OP:NHOMOORG 629 OP:PATTERN ---------------------------------------------------------1---------- 211--------------------------------------------------------------------------------11111111111111--111121-221111111111111111111111111111-----------21-33111111111--12-3223--1-1---1-1--11211--1-2133333212-213121323312122122--11122222111111-1111111111---1-----11---------11-11-----------------------------------------11---111--1--13332132121-1--1111-11--11122222121131------1111-111111111111111111111111111111111-11111111111-1111111111111111111111111111111111111111121------------------------------11111111111111111111111111111111111111111111111111111111111111111111111111111211-1111111111111111111222221111111111111111111111111112111111111111111111111111111111111-111111--11133223333333333333-33334333333333333333332222233332232222333333333333321222222222222111111111111111111111111111111111----------2122221222111111222---------11111111111111111222222221111--11111111111111111-----------------------------1--------21 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 163 STR:RPRED 37.0 SQ:SECSTR #################################################################################################################################################################################################################cEEEEEcccccccccEEETTEEHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHTccEEEEEcccccccTTccccEEEEcGGGHHHHHHHHHHHHHHHcccc###########################################cTcTTEEEGGGcccTTHHHHHTTcEEEEcccTTcHHHHHHHHHHHHH########################## DISOP:02AL 1-8,102-110,163-172,195-204,431-442| PSIPRED cccccHHHccccccHHHHHHHHHHHHHHHHccccHHHHHccccccccccccccEEEEEEEcccccEEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccccccEEEccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHccccEEEEEEccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccEEEEEEcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccc //