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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39714.1
DDBJ      :             DNA topoisomerase IV subunit B
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  910/915 : Eukaryota  189/199 : Viruses  9/175   --->[See Alignment]
b.30.6d.122.1d.14.1d.173.1e.11.1
:684 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   43->422 1ei1A PDBj 3e-64 43.3 %
:BLT:PDB   463->672 3fofD PDBj 3e-40 51.4 %
:RPS:PDB   52->419 3cwvB PDBj 3e-81 26.8 %
:RPS:PDB   444->680 1bgwA PDBj 7e-59 24.1 %
:RPS:SCOP  41->214 1j6rA  d.173.1.2 * 4e-36 10.1 %
:RPS:SCOP  263->388 1pvgA1  d.14.1.3 * 3e-18 23.3 %
:RPS:SCOP  359->641 1jmmA  b.30.6.1 * 2e-75 11.0 %
:HMM:SCOP  40->256 1s16A2 d.122.1.2 * 8.4e-57 44.8 %
:HMM:SCOP  265->432 1s16A1 d.14.1.3 * 7.9e-45 32.5 %
:HMM:SCOP  439->672 1bjtA_ e.11.1.1 * 1.3e-79 52.2 %
:RPS:PFM   76->126 PF04268 * SoxG 6e-04 43.8 %
:RPS:PFM   266->419 PF00204 * DNA_gyraseB 1e-24 33.6 %
:RPS:PFM   463->565 PF01751 * Toprim 9e-13 44.1 %
:RPS:PFM   609->670 PF00986 * DNA_gyraseB_C 7e-12 53.3 %
:HMM:PFM   266->436 PF00204 * DNA_gyraseB 3e-44 31.8 170/173  
:HMM:PFM   606->670 PF00986 * DNA_gyraseB_C 2.1e-26 57.1 63/65  
:HMM:PFM   67->209 PF02518 * HATPase_c 8.7e-19 28.6 105/111  
:HMM:PFM   464->563 PF01751 * Toprim 9.7e-08 22.6 84/96  
:BLT:SWISS 38->678 GYRB_BARBK 0.0 60.7 %
:PROS 467->475|PS00177|TOPOISOMERASE_II
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39714.1 GT:GENE ABE39714.1 GT:PRODUCT DNA topoisomerase IV subunit B GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(2775572..2777626) GB:FROM 2775572 GB:TO 2777626 GB:DIRECTION - GB:PRODUCT DNA topoisomerase IV subunit B GB:PROTEIN_ID ABE39714.1 GB:DB_XREF GI:91683412 InterPro:IPR000565 InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR006171 InterPro:IPR011558 LENGTH 684 SQ:AASEQ MAKALKPSSKSKSAGDLFGAAPKSAAPRPAAKPTGGAEAGYTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHATFIEVELTTDGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSLLEVEVARGQQLYRMVFARGIPQGKLESLGKINNRRGTRVRFKPDADIFGAKAAFKPQRLFKMARSKAYLFGGVEIRWKCDPELLKGLEDVPAEDTFHFPGGLKDYLGAAIHADTLVHPDIFSGKSGRNGAHGACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGMRSALLRGLKDHAERVGQGKRASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQRIVEQAIKDPFDHWLSGNPVQANKLLDFVVERAEERLRRRQEKEISRKTAVKKLRLPGKLADCTNTAAEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASATKDKVVANAQLSDLMQAIGCGTGVNYREEDLRYARIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKAELLKKEFNANAKVDVGRFKGLGEMMPAQLKETTMDPAKRTLLRVVLLPDDREGTADSVERLMGTKAEARFAFISDKAEFASEDLLDV GT:EXON 1|1-684:0| BL:SWS:NREP 1 BL:SWS:REP 38->678|GYRB_BARBK|0.0|60.7|639/692| PROS 467->475|PS00177|TOPOISOMERASE_II|PDOC00160| SEG 2->14|akalkpssksksa| SEG 20->33|aapksaaprpaakp| SEG 148->159|sgglhgvgvsvv| SEG 423->436|eraeerlrrrqeke| BL:PDB:NREP 2 BL:PDB:REP 43->422|1ei1A|3e-64|43.3|365/391| BL:PDB:REP 463->672|3fofD|3e-40|51.4|185/199| RP:PDB:NREP 2 RP:PDB:REP 52->419|3cwvB|3e-81|26.8|306/311| RP:PDB:REP 444->680|1bgwA|7e-59|24.1|237/679| RP:PFM:NREP 4 RP:PFM:REP 76->126|PF04268|6e-04|43.8|48/147|SoxG| RP:PFM:REP 266->419|PF00204|1e-24|33.6|152/169|DNA_gyraseB| RP:PFM:REP 463->565|PF01751|9e-13|44.1|102/110|Toprim| RP:PFM:REP 609->670|PF00986|7e-12|53.3|60/65|DNA_gyraseB_C| HM:PFM:NREP 4 HM:PFM:REP 266->436|PF00204|3e-44|31.8|170/173|DNA_gyraseB| HM:PFM:REP 606->670|PF00986|2.1e-26|57.1|63/65|DNA_gyraseB_C| HM:PFM:REP 67->209|PF02518|8.7e-19|28.6|105/111|HATPase_c| HM:PFM:REP 464->563|PF01751|9.7e-08|22.6|84/96|Toprim| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF00204|IPR013506| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00204|IPR013506| GO:PFM GO:0005524|"GO:ATP binding"|PF00204|IPR013506| GO:PFM GO:0005694|"GO:chromosome"|PF00204|IPR013506| GO:PFM GO:0006265|"GO:DNA topological change"|PF00204|IPR013506| GO:PFM GO:0003677|"GO:DNA binding"|PF00986|IPR002288| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00986|IPR002288| GO:PFM GO:0005524|"GO:ATP binding"|PF00986|IPR002288| GO:PFM GO:0005694|"GO:chromosome"|PF00986|IPR002288| GO:PFM GO:0006265|"GO:DNA topological change"|PF00986|IPR002288| RP:SCP:NREP 3 RP:SCP:REP 41->214|1j6rA|4e-36|10.1|169/197|d.173.1.2| RP:SCP:REP 263->388|1pvgA1|3e-18|23.3|103/139|d.14.1.3| RP:SCP:REP 359->641|1jmmA|2e-75|11.0|283/377|b.30.6.1| HM:SCP:REP 40->256|1s16A2|8.4e-57|44.8|212/213|d.122.1.2|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| HM:SCP:REP 265->432|1s16A1|7.9e-45|32.5|166/167|d.14.1.3|1/1|Ribosomal protein S5 domain 2-like| HM:SCP:REP 439->672|1bjtA_|1.3e-79|52.2|230/760|e.11.1.1|1/1|Type II DNA topoisomerase| OP:NHOMO 1977 OP:NHOMOORG 1130 OP:PATTERN -----------------------111111111-----------1111111111--------111---- 1111211111111111112-12111311111122221111212122222222222222222222221223222222221111111111222212222112222222222222222222222222211111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222322222234222222212122222222222221222222222111221122111121111111111113222222222222222222222322222222222-22223222222222222222222222222222222222222222222222222221111111111112222222222222111112222222222222222222222222222222232222222222222222222222221121222222222111222112121111111111111111111111132111111111111111111111111111222222222222222222222222222222221-2222211111122222222222222222-22122222222222222222222222222222222222222222222222221222222222222112222222222222322222222222212222222222222222222222222222222222222222222222222222222222222222222222222212222222222222221211112-22222222222222222221111111111122 22-12111622111211111111111111111111-1111-111111111111111111111111111-111111111111-111111-12112111111111111115212223341212222221319F2-426222121223222222-13-422313812131111-43123222F2222252381433442222 ---11--------------1---------------111------------------------------------------------------------------------------------------------------------------------------------111-- STR:NPRED 640 STR:RPRED 93.6 SQ:SECSTR ########################################ccGGGcccccHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHTTcccEEEEEEcTTccEEEEEEcccHHHHHHHHHHTTTHHHHHTEEEEEEEEcccccEEcccTTTTccHHHHHHTEEEEEEEEEETTEEEEEEEETTEEccTcccccccccccEEEEEEEEcTTTccccccccHHHHHHHHHHHHHHcTTcEEEEEETTTEcTTcTTTTEEEEEEcTTHHHHHHHHHHTTccccccccEEEEEEETTEEEEEEEEEEEccccccEEEEEETTEEcTTccHHHHHHHHHHHHHHHHHHTTcccHccGGGccHHHHTTTEEEEEEEEccGGccccccTTccccTTHHHHHHHHHHHHHHHHHTTcTTHHHHHTTTccHEEcTTccEEEcEEcHHHHHHHHHHHTTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEETTcTTcccEEEcccccTTGGGGEEEEEEEETTEEEEEEEEETTTTEEEEEEEEEcccccGGGEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHTTcccEHHHHTEEEEEccccHHHHHHHHHHHHHTcccEEEETTcHHHHHHHHHHHHHHHHccTTcccHHHHHHHHHHHHTTcccc#### DISOP:02AL 1-18,22-46,426-451| PSIPRED ccccccccccccccccccccccccccccccccccccccccccHHHEEEccccHHHHHccccEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEccEEEcccccccccccEEEEEEEEEEEcccccccccEEEEccccHHHHHHHEEcccEEEEEEEEccEEEEEEEEccEEcccccEEcccccccEEEEEEEEcHHHHcccccccHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccEEEEEcccHHHHHHHHHHccccccccccEEEEccccccccEEEEEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccccEEEEEEccccccccccccccccEEEEcccccEEEHHcccHHHHHccHHHHHHHHHHcccccccccHHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHccEEEEEEccEEEEEEccEEEEEccHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHcHHccEEEEEEEccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccc //