[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39766.1
DDBJ      :             hydroxymethylglutaryl-CoA lyase
Swiss-Prot:             

Homologs  Archaea  17/68 : Bacteria  345/915 : Eukaryota  160/199 : Viruses  0/175   --->[See Alignment]
c.1.10
:306 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->296 2ftpA PDBj 5e-84 57.5 %
:RPS:PDB   1->289 2cw6F PDBj 2e-46 47.3 %
:RPS:SCOP  3->289 1sr9A2  c.1.10.5 * 3e-47 18.6 %
:HMM:SCOP  1->288 1rqbA2 c.1.10.5 * 1.2e-68 36.4 %
:RPS:PFM   13->258 PF00682 * HMGL-like 7e-20 30.0 %
:HMM:PFM   13->260 PF00682 * HMGL-like 1.4e-51 33.2 235/237  
:HMM:PFM   268->282 PF07918 * CAP160 0.001 66.7 15/27  
:BLT:SWISS 5->292 HMGCL_MACFA 2e-80 50.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39766.1 GT:GENE ABE39766.1 GT:PRODUCT hydroxymethylglutaryl-CoA lyase GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 2839551..2840471 GB:FROM 2839551 GB:TO 2840471 GB:DIRECTION + GB:PRODUCT hydroxymethylglutaryl-CoA lyase GB:PROTEIN_ID ABE39766.1 GB:DB_XREF GI:91683464 InterPro:IPR000891 LENGTH 306 SQ:AASEQ MSDTIRIVEVGPRDGLQNEKMPVGVADRITFVAALVDAGLSTVEVGAFVSPKAVPQMVGSDEVLRASLKLPGEFHVLVPNEKGYEAARAAGAQVVAVFASASEGFSRANINCSVAESIERFKPVIARAQADGVRVRGYISCVLGCPFDGQVPVQAVVDAATTLWDLGCYEVSLGDTIGVGTPTKVRELLRACAEAVPMASLAMHFHDTYGQALANLYAGLEEGARVIDSAAGGLGGCPYAPGATGNVATEDVVYMLEGMGITTGVDMDKLIAATNGVASLLGRPPVSRVVNALNAKNKRVTGTTSS GT:EXON 1|1-306:0| BL:SWS:NREP 1 BL:SWS:REP 5->292|HMGCL_MACFA|2e-80|50.0|288/325| SEG 86->101|aaraagaqvvavfasa| BL:PDB:NREP 1 BL:PDB:REP 5->296|2ftpA|5e-84|57.5|292/300| RP:PDB:NREP 1 RP:PDB:REP 1->289|2cw6F|2e-46|47.3|281/288| RP:PFM:NREP 1 RP:PFM:REP 13->258|PF00682|7e-20|30.0|233/237|HMGL-like| HM:PFM:NREP 2 HM:PFM:REP 13->260|PF00682|1.4e-51|33.2|235/237|HMGL-like| HM:PFM:REP 268->282|PF07918|0.001|66.7|15/27|CAP160| GO:PFM:NREP 1 GO:PFM GO:0003824|"GO:catalytic activity"|PF00682|IPR000891| RP:SCP:NREP 1 RP:SCP:REP 3->289|1sr9A2|3e-47|18.6|279/310|c.1.10.5| HM:SCP:REP 1->288|1rqbA2|1.2e-68|36.4|264/303|c.1.10.5|1/1|Aldolase| OP:NHOMO 816 OP:NHOMOORG 522 OP:PATTERN ------11111111-1--22222-------2------------1---1-------------------- 11111-1-----1-111----1--12-----1111112231--2---1----11------111-113111------------2----------------1-111111111--------------------------2224311132-------11-------------------------------11---11111111121111111111111111111112--------1----------------1--------------------------------------------------------------------------1-1------------11-------------------1----11--11------1112-------3111111121111-11111-11-11411311-1--1111--11-122221211232222222--------1--1-121-------------------------------11--144344333341----22331111113123562-123141233445253111----11111--11---111122---1--1---------211-2221211-----------------------------11-11-112111111111111111111111---1-----------1131------------------------------------11-------------------------1----------------1111111111111-1--------1------22112-11112111111122121322111-------------21222223-211111111111--------11-111------------------------------------------------1 ----111---1-121221132222123112111111111111111111111122112111111------1-----------111-----14121111111121212-1112232314221212132252CK3-647222232221222222122232221111211211172111111-----1133351311-2111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 302 STR:RPRED 98.7 SQ:SECSTR cccccEEEEcTTTHHHHTccccccHHHHHHHHHHHHHHTcccccccccccTTTcGGGTTHHHHHHTccccTTcccEEcccHHHHHHHHHTTccEEEEEEEccHHHHHccccHEcHHHHHHHHHHHHHHHHHTcEEEEEEETTTccTTTccccHHHHHHHHHHHHHHTccEEEEEETTccccHHHHHHHHHHHHHHccGGGEEEEEccTTccHHHHHHHHHHHTccEEEEcTTcccccTTcccccccccHHHHHHHHHHHTccccccHHHHHHHHHHHHHTTTcccccHHHHHcccccccccc#### DISOP:02AL 1-1,304-307| PSIPRED cccEEEEEEcccccccccccccccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHcccEEEEEEccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHcccEEEEEEcccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccEEccccccccccccccc //