[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39807.1
DDBJ      :             Type I secretion outer membrane protein, TolC
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  434/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.5.1
:522 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   93->493 1tqqA PDBj 5e-18 27.5 %
:RPS:PDB   92->488 1ek9A PDBj 9e-43 20.3 %
:RPS:SCOP  87->493 1ek9A  f.5.1.1 * 4e-47 20.4 %
:HMM:SCOP  65->488 1wp1A_ f.5.1.1 * 2.1e-84 30.2 %
:RPS:PFM   92->282 PF02321 * OEP 2e-14 29.9 %
:RPS:PFM   304->471 PF02321 * OEP 2e-08 27.2 %
:HMM:PFM   95->282 PF02321 * OEP 9.6e-34 26.4 182/188  
:HMM:PFM   302->482 PF02321 * OEP 1.4e-32 28.7 181/188  
:BLT:SWISS 164->477 APRF_PSEAE 3e-21 24.7 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39807.1 GT:GENE ABE39807.1 GT:PRODUCT Type I secretion outer membrane protein, TolC GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 2887328..2888896 GB:FROM 2887328 GB:TO 2888896 GB:DIRECTION + GB:PRODUCT Type I secretion outer membrane protein, TolC GB:PROTEIN_ID ABE39807.1 GB:DB_XREF GI:91683505 InterPro:IPR003423 InterPro:IPR010130 LENGTH 522 SQ:AASEQ MSVARRPHRTSFTRRVKPGVPSSDCVPYCAMGLTSADAARLISATVSWATNRTAKLDARMDGVKRFSGLVTAGIVLVCLGPAPVSAETIESALIRAYQTNPQLNAQRASVRSTDEQVPQALSGYRPKVSITASGGYQYTDVNSLFGGNQIHLSGSNYPRTVGATVSQTLFNGNQTANRTRAAESQVSSAREGLRVLEQSVLLSAATIYMDYLRDSATVEVQKSNVRVLEQTLKQTNDRFNVGEVTRTDVAQSQAQLAAGNTQLLTAESNLTTTRANYRRIIGSEPTGLAPGSPVDRFLPATLAQAVDLGLTENPNVTAAMFGIDVSYLNVKINEGALFPTVSLQANAQQGYEQSITSPRQFVASAIAQVSVPIFQGGAEYALIRQSKESLSQQRLNLEQVRDQARASIVQAWGQLQAGRAQVASAQSQVKASEIALNGVREEARAGQRTTLDVLNAQQALVNARVSLVTAQHDRVVASYAVLSAVGRLAPQVLGLKTDIYDPSVHYQQVRDSWVGVRTPDGR GT:EXON 1|1-522:0| BL:SWS:NREP 1 BL:SWS:REP 164->477|APRF_PSEAE|3e-21|24.7|312/481| COIL:NAA 32 COIL:NSEG 1 COIL:REGION 402->433| SEG 420->432|aqvasaqsqvkas| BL:PDB:NREP 1 BL:PDB:REP 93->493|1tqqA|5e-18|27.5|385/428| RP:PDB:NREP 1 RP:PDB:REP 92->488|1ek9A|9e-43|20.3|385/423| RP:PFM:NREP 2 RP:PFM:REP 92->282|PF02321|2e-14|29.9|187/189|OEP| RP:PFM:REP 304->471|PF02321|2e-08|27.2|168/189|OEP| HM:PFM:NREP 2 HM:PFM:REP 95->282|PF02321|9.6e-34|26.4|182/188|OEP| HM:PFM:REP 302->482|PF02321|1.4e-32|28.7|181/188|OEP| GO:PFM:NREP 4 GO:PFM GO:0005215|"GO:transporter activity"|PF02321|IPR003423| GO:PFM GO:0006810|"GO:transport"|PF02321|IPR003423| GO:PFM GO:0005215|"GO:transporter activity"|PF02321|IPR003423| GO:PFM GO:0006810|"GO:transport"|PF02321|IPR003423| RP:SCP:NREP 1 RP:SCP:REP 87->493|1ek9A|4e-47|20.4|398/428|f.5.1.1| HM:SCP:REP 65->488|1wp1A_|2.1e-84|30.2|420/0|f.5.1.1|1/1|Outer membrane efflux proteins (OEP)| OP:NHOMO 781 OP:NHOMOORG 437 OP:PATTERN -------------------------------------------------------------------- 112--------------------------------------------------------------------------------1--213374-7------3--1251321--------------145245234415----------------111------1-------1------------------1-2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------112-222221111324341132225111111111111-11112112111----1--1---11111111111111211222222221231131111111111111111111111111111111112221111-1111112-1111--431111-21-34244--22122121114211113123223-------12312222231242213222-132223211----1-11211------------------1---44223112112112222223223322232222---1211------11121211221111111-211111111121211111211155222222222222122222221111111--222222222222--111-1--32223-111111----------1-222221311--15535666323333225511111111113222222224433311-1-11---1-----3-----------------------------------------------------21- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------1-------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 406 STR:RPRED 77.8 SQ:SECSTR #######################################################################################HHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHGGGccEEEEEEEEEEEEcccccccccccEEEETTcEEEEEEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcTTTccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHGGGccEEEEEEEEEEEccEcTTccccEEEEEEEEEEcccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccHHHH############################# DISOP:02AL 1-9,141-151,425-430,432-433,521-523| PSIPRED cccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccccccccccccccccccccEEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccccccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccHHHHHHccccccccccc //