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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39825.1
DDBJ      :             DNA gyrase subunit A
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  910/915 : Eukaryota  183/199 : Viruses  8/175   --->[See Alignment]
b.68.10e.11.1
:917 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   40->522 1ab4A PDBj e-125 51.3 %
:BLT:PDB   537->905 1zi0B PDBj 2e-57 46.8 %
:RPS:PDB   40->522 1ab4A PDBj e-158 56.1 %
:RPS:PDB   524->643 3dwpC PDBj 1e-37 16.2 %
:RPS:PDB   650->747 3dwpC PDBj 1e-05 6.6 %
:RPS:PDB   807->902 3dwpC PDBj 2e-13 14.7 %
:RPS:SCOP  40->522 1ab4A  e.11.1.1 * e-159 56.1 %
:RPS:SCOP  535->906 1wp5A  b.68.10.1 * 1e-79 26.0 %
:HMM:SCOP  16->526 1bjtA_ e.11.1.1 * 1.1e-182 57.1 %
:HMM:SCOP  534->915 1wp5A_ b.68.10.1 * 1e-96 47.9 %
:RPS:PFM   42->507 PF00521 * DNA_topoisoIV e-144 62.1 %
:RPS:PFM   538->586 PF03989 * DNA_gyraseA_C 1e-04 42.9 %
:RPS:PFM   695->743 PF03989 * DNA_gyraseA_C 1e-05 47.9 %
:HMM:PFM   42->506 PF00521 * DNA_topoisoIV 3e-155 50.7 422/426  
:HMM:PFM   538->586 PF03989 * DNA_gyraseA_C 1.4e-15 36.7 49/50  
:HMM:PFM   591->635 PF03989 * DNA_gyraseA_C 0.00014 21.4 42/50  
:HMM:PFM   649->693 PF03989 * DNA_gyraseA_C 1e-09 17.8 45/50  
:HMM:PFM   696->742 PF03989 * DNA_gyraseA_C 2.3e-12 43.5 46/50  
:HMM:PFM   808->855 PF03989 * DNA_gyraseA_C 4.9e-11 34.0 47/50  
:HMM:PFM   858->903 PF03989 * DNA_gyraseA_C 8.1e-16 30.4 46/50  
:BLT:SWISS 16->905 GYRA_RICFE 0.0 54.6 %
:REPEAT 2|642->740|802->902
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39825.1 GT:GENE ABE39825.1 GT:PRODUCT DNA gyrase subunit A GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 2910377..2913130 GB:FROM 2910377 GB:TO 2913130 GB:DIRECTION + GB:PRODUCT DNA gyrase subunit A GB:PROTEIN_ID ABE39825.1 GB:DB_XREF GI:91683523 InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691 LENGTH 917 SQ:AASEQ MSDKDDEKPGEPKAPSDIRPISILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACIALIEDPALGIDDLINIIPGPDFPTGGIILGRAGIRLAYHTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPHLMNLRDLLTLFVAFREQVVTRRTKYLLGKARDRAHILVGLAIAVANIDEMIRVIRNSPDPNTARETLMSRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLALEIADYLDILRSRARVQTIVKDELIAVKTEFATPRKTMIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFTGRTSMGVRGIALASGDKVISLCILRHFEATPAERTTYLKQSGAFRRAAIGEDTDVSEVSEVTAEAESEEAEGLTALSSDRYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIGAMSVNNRNGKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFDTADDEKVVSVEHIPEAEEAENGNGG GT:EXON 1|1-917:0| BL:SWS:NREP 1 BL:SWS:REP 16->905|GYRA_RICFE|0.0|54.6|875/906| NREPEAT 1 REPEAT 2|642->740|802->902| SEG 143->151|lllddldkd| SEG 230->242|ggiilgragirla| SEG 774->790|vsevsevtaeaeseeae| SEG 907->916|eaeeaengng| BL:PDB:NREP 2 BL:PDB:REP 40->522|1ab4A|e-125|51.3|472/477| BL:PDB:REP 537->905|1zi0B|2e-57|46.8|293/296| RP:PDB:NREP 4 RP:PDB:REP 40->522|1ab4A|e-158|56.1|472/477| RP:PDB:REP 524->643|3dwpC|1e-37|16.2|117/120| RP:PDB:REP 650->747|3dwpC|1e-05|6.6|97/120| RP:PDB:REP 807->902|3dwpC|2e-13|14.7|95/120| RP:PFM:NREP 3 RP:PFM:REP 42->507|PF00521|e-144|62.1|433/434|DNA_topoisoIV| RP:PFM:REP 538->586|PF03989|1e-04|42.9|49/50|DNA_gyraseA_C| RP:PFM:REP 695->743|PF03989|1e-05|47.9|48/50|DNA_gyraseA_C| HM:PFM:NREP 7 HM:PFM:REP 42->506|PF00521|3e-155|50.7|422/426|DNA_topoisoIV| HM:PFM:REP 538->586|PF03989|1.4e-15|36.7|49/50|DNA_gyraseA_C| HM:PFM:REP 591->635|PF03989|0.00014|21.4|42/50|DNA_gyraseA_C| HM:PFM:REP 649->693|PF03989|1e-09|17.8|45/50|DNA_gyraseA_C| HM:PFM:REP 696->742|PF03989|2.3e-12|43.5|46/50|DNA_gyraseA_C| HM:PFM:REP 808->855|PF03989|4.9e-11|34.0|47/50|DNA_gyraseA_C| HM:PFM:REP 858->903|PF03989|8.1e-16|30.4|46/50|DNA_gyraseA_C| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF00521|IPR002205| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00521|IPR002205| GO:PFM GO:0005524|"GO:ATP binding"|PF00521|IPR002205| GO:PFM GO:0005694|"GO:chromosome"|PF00521|IPR002205| GO:PFM GO:0006265|"GO:DNA topological change"|PF00521|IPR002205| GO:PFM GO:0003677|"GO:DNA binding"|PF03989|IPR006691| GO:PFM GO:0003916|"GO:DNA topoisomerase activity"|PF03989|IPR006691| GO:PFM GO:0005524|"GO:ATP binding"|PF03989|IPR006691| GO:PFM GO:0005694|"GO:chromosome"|PF03989|IPR006691| GO:PFM GO:0006265|"GO:DNA topological change"|PF03989|IPR006691| GO:PFM GO:0003677|"GO:DNA binding"|PF03989|IPR006691| GO:PFM GO:0003916|"GO:DNA topoisomerase activity"|PF03989|IPR006691| GO:PFM GO:0005524|"GO:ATP binding"|PF03989|IPR006691| GO:PFM GO:0005694|"GO:chromosome"|PF03989|IPR006691| GO:PFM GO:0006265|"GO:DNA topological change"|PF03989|IPR006691| RP:SCP:NREP 2 RP:SCP:REP 40->522|1ab4A|e-159|56.1|472/477|e.11.1.1| RP:SCP:REP 535->906|1wp5A|1e-79|26.0|304/323|b.68.10.1| HM:SCP:REP 16->526|1bjtA_|1.1e-182|57.1|468/760|e.11.1.1|1/1|Type II DNA topoisomerase| HM:SCP:REP 534->915|1wp5A_|1e-96|47.9|313/0|b.68.10.1|1/1|GyrA/ParC C-terminal domain-like| OP:NHOMO 1973 OP:NHOMOORG 1123 OP:PATTERN -----------------------111111111-----------1111111111--------111---- 1111211111111111112-12111211111122221111211122222222222222222222221222222222221111111111222212222112222222222222222222222222211111111111111111111122222222222222222222222222222222222221111111112222222222222222222222222222212222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222212122222222222221222222222111221122111121111111111112222222222222222222222222222222222-22223222222222222222222222222222222222222222222222222221111111111112222222222222111112222222222222222222222222222222232222222222222222222222221121222222222111222112121111111111111111111111122111111111111111111111111111222223222222222222222222222222221-2222211111122222222222222222-22222222222222222222222222222222222222222222222222221222222222222112222222222222222222222222112222222122222222222222222222222222222222222222222222222322222222222222222212222222222222221211112-22222222222222222231111111111122 221122-16221112111111111111111111111111121111111111111111111111-1111-1111-1111111-111111-12111111111-2111111222121314112122122-319I2-4262--12-223121-21113-422113912111111-42-13222F2233232131233432222 ---1---------------1---------------111-1----------------------------------------------------------------------------------------------------------------------------------1-1-- STR:NPRED 865 STR:RPRED 94.3 SQ:SECSTR #######cTTTTTcHHcHHHHHHHHHHHTTcccccHHHHcTTTcccTTTcccHHHHHHHHHHHHTTcccccccEEHHHHHHHHHHHTccccHHHHHHHHHHTTcTTTcccccEEEEcccccTTccccccTTTcEEEEcTTHHHHcTTTTTTcccEEEcTTcccEEEccccccccHHHHHcEEEccccccEEEccccHHHHHHHHHHHHHcTTccHHHHTTTccccccccccEEcccHHHHHHHHHcEEEEEEEcEEEEEcHcEETcEEEEEEccTTccHHHHHHHHHHHHTTTcccccccEEEccccccccEEEcccHHHHcHHHHHHHHHHcTTEEEEEEEcEEEETTEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHcccHHHHHHHHHHccEEccGGGTTcccccccTTcEEcccEEEccHHHHHHHHTccGGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccEEEEETTEEEEEEEEGGEETTEEEEEEEEEEccccTGGGEHHHHTTTcTTcEEEEEcccccGGGGGGcHHHHHHccEEEEEETTTTGGGTccHHHHHHHHHHHHHHHHcHHHHHEEEEEEEEcccccTTHHTcccTTccccTTccccccccHHHHHHHHHHHHHHHHHHHHHHHTccGGccHHHHHHHHHTcHHccGGGccccGGGEEEEcccccccccccccccccE#####EEEEETTcEEEEEcGGG#############################ccHHcHHHHHHHTcccTTccccTTcccccccHcccHHHHHHHHHHHHHHHHHHHHHHTccGGGccHHHHHHHHHTccEEEEEEEEccccEEEEEEcccEEEcTTccE########### DISOP:02AL 1-6,8-11,558-570,781-792,881-882,884-884,909-918| PSIPRED cccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccHHEEHHHHHHHHHHHcccccccccccccccccccEEEcccccEEEEEccccEEEccccccccccHHHHHHHHHHHHHcccccHHHHHHHccccccccccEEEEcccEEEEEEccccEEEEEEEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHccccccEEccccccccccEEEEEEEcccccHHHHHHHHHHHcccccEEEEEEEEEEccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHcccccccHHHHHHHcccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccEEEEEcccccEEEEEHHHHHHccccccccccccccccccEEEEEEEEcccEEEEEEccccEEEEEHHHccccccccccEEEHHccccccccEEEEEEEEccccccccccEEEEEEcccEEEEEEcHHHcccccccEEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEHHHcccccccccccEEEEEEccccEEEEEEEEccccccccccEEEEEccccEEEEEHHHcccHHHHHHHHHHHHHHHHcccccccccEEEEEEccccEEEEEEcccEEEEEEHHHcccccccccEEEEEEEcccccEEEEEEEEcccccEEEEccccEEEEEEHHHcccccccccccEEEEEccccEEEEEEEccccHHccccccc //