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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39851.1
DDBJ      :             transcription-repair coupling factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  880/915 : Eukaryota  20/199 : Viruses  0/175   --->[See Alignment]
b.34.18c.37.1d.315.1
:1172 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   73->1166 2eyqB PDBj 0.0 40.6 %
:RPS:PDB   52->429 1d9zA PDBj 1e-41 19.2 %
:RPS:PDB   587->1091 1cu1A PDBj 8e-46 10.2 %
:RPS:SCOP  52->349 2b2nA1  c.37.1.19 * 2e-71 33.2 %
:RPS:SCOP  370->489 2eyqA2  c.37.1.19 * 8e-10 23.4 %
:RPS:SCOP  491->567 2eyqA1  b.34.18.1 * 8e-30 46.8 %
:RPS:SCOP  568->800 2eyqA3  c.37.1.19 * 2e-81 54.1 %
:RPS:SCOP  801->1011 2eyqA5  c.37.1.19 * 2e-72 52.6 %
:RPS:SCOP  1014->1166 2eyqA6  d.315.1.1 * 2e-43 27.5 %
:HMM:SCOP  3->365 2eyqA4 c.37.1.19 * 1.8e-85 37.2 %
:HMM:SCOP  368->491 2eyqA2 c.37.1.19 * 4.1e-26 34.8 %
:HMM:SCOP  489->567 2eyqA1 b.34.18.1 * 1.1e-22 50.6 %
:HMM:SCOP  542->803 1gm5A3 c.37.1.19 * 5.8e-63 37.5 %
:HMM:SCOP  801->1011 2eyqA5 c.37.1.19 * 2.2e-52 34.1 %
:HMM:SCOP  1010->1167 2eyqA6 d.315.1.1 * 2.6e-44 35.4 %
:RPS:PFM   503->593 PF02559 * CarD_TRCF 2e-21 49.5 %
:RPS:PFM   575->737 PF07517 * SecA_DEAD 7e-04 32.7 %
:RPS:PFM   858->929 PF00271 * Helicase_C 1e-05 33.8 %
:RPS:PFM   1032->1124 PF03461 * TRCF 2e-19 39.8 %
:HMM:PFM   500->594 PF02559 * CarD_TRCF 1.1e-30 51.6 95/98  
:HMM:PFM   1026->1123 PF03461 * TRCF 4.8e-30 35.7 98/101  
:HMM:PFM   624->784 PF00270 * DEAD 4.9e-20 28.9 149/167  
:HMM:PFM   856->928 PF00271 * Helicase_C 1.9e-16 33.3 72/78  
:BLT:SWISS 62->1143 MFD_RICBR 0.0 43.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39851.1 GT:GENE ABE39851.1 GT:PRODUCT transcription-repair coupling factor GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 2936792..2940310 GB:FROM 2936792 GB:TO 2940310 GB:DIRECTION + GB:PRODUCT transcription-repair coupling factor GB:PROTEIN_ID ABE39851.1 GB:DB_XREF GI:91683549 InterPro:IPR001410 InterPro:IPR001650 InterPro:IPR003711 InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545 LENGTH 1172 SQ:AASEQ MKTPHRSPAELLTPGKALTFANVAEGAEGLIISDLARAVAARPKPPAVSLAVICRDGPRMQQLARSLEFFAPDVAVMQFPAWDCQPYDRVSPHSGILAQRVTALARLSRLAGSDKPLIVLTTVNAAVQRVPMREVIAGQALSVAPGNVVPMDSIVAWLEHNGYSRASTVREPGEYAVRGGILDLFPAGLDQPVRFDFFGDQLESIRTFDAETQRTLHAMRGLDLVPVSEFQLISETIRRFRMGYVAAFGAPDRDDQLYSAVSEGRRHPGMEHWLPLFQERMDTLFDYLPGAPVAIEPQSEDAARERFKQITDYYEARREAMDQPGSGAIYKPLPPDQLYLTDSEWTARLEGASLARLTPFAVPDDGGSVIDAGARAGRNFAPERADTAVNVFETLVAHVQALQATRKKVVIALWSEGSRDRMASMLKDHKLVHLTSVNSWRTVQATPRNEAMLAVVGLESGFETDAFAVITEQDILGDRLVRQRKSSKKLDNFISEVTSLASGDIVVHVEHGIGRFIGLQTLEVGGAPHDCVELHYANDTKLFLPVENIELLSRYGSDGTNVELDKLGGSGWQARKAKLKNRIRQIAGELIKVAAERHLREAPKLQVEPHLYDEFCARFPYDETEDQLAAINAALGDLGRGMPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFADRFRGFPVNVGQASRLVSPKELTQVKKGIADGQIDIVVGTHALLGKAIKFKDLGLVVVDEEQHFGVTHKERLKQLRAEVHVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVCPRIDDLAEVKDFLDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVESGLDIPTANTLIIHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPSQHKITPQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAITNLKAGVSEPVADRWSPQITIGMPVLIPEEFVNDLSVRLSLYRRLADLDTDEEIENFAAELRDRFGPLPDEVRYLFKVAAIKAYCRRANVEKVDAGPKGVVITFRDNSFAQPDRLVTFIRRHGDAAKVRPDMKVVFFQVWKTPEERLAGTTDIMKQLAELAETRKAA GT:EXON 1|1-1172:0| BL:SWS:NREP 1 BL:SWS:REP 62->1143|MFD_RICBR|0.0|43.4|1055/1120| SEG 36->48|aravaarpkppav| BL:PDB:NREP 1 BL:PDB:REP 73->1166|2eyqB|0.0|40.6|1074/1143| RP:PDB:NREP 2 RP:PDB:REP 52->429|1d9zA|1e-41|19.2|370/590| RP:PDB:REP 587->1091|1cu1A|8e-46|10.2|462/645| RP:PFM:NREP 4 RP:PFM:REP 503->593|PF02559|2e-21|49.5|91/100|CarD_TRCF| RP:PFM:REP 575->737|PF07517|7e-04|32.7|147/376|SecA_DEAD| RP:PFM:REP 858->929|PF00271|1e-05|33.8|71/76|Helicase_C| RP:PFM:REP 1032->1124|PF03461|2e-19|39.8|93/101|TRCF| HM:PFM:NREP 4 HM:PFM:REP 500->594|PF02559|1.1e-30|51.6|95/98|CarD_TRCF| HM:PFM:REP 1026->1123|PF03461|4.8e-30|35.7|98/101|TRCF| HM:PFM:REP 624->784|PF00270|4.9e-20|28.9|149/167|DEAD| HM:PFM:REP 856->928|PF00271|1.9e-16|33.3|72/78|Helicase_C| GO:PFM:NREP 12 GO:PFM GO:0003700|"GO:transcription factor activity"|PF02559|IPR003711| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02559|IPR003711| GO:PFM GO:0005524|"GO:ATP binding"|PF07517|IPR011115| GO:PFM GO:0016020|"GO:membrane"|PF07517|IPR011115| GO:PFM GO:0017038|"GO:protein import"|PF07517|IPR011115| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| GO:PFM GO:0003684|"GO:damaged DNA binding"|PF03461|IPR005118| GO:PFM GO:0004386|"GO:helicase activity"|PF03461|IPR005118| GO:PFM GO:0005524|"GO:ATP binding"|PF03461|IPR005118| GO:PFM GO:0006281|"GO:DNA repair"|PF03461|IPR005118| RP:SCP:NREP 6 RP:SCP:REP 52->349|2b2nA1|2e-71|33.2|286/308|c.37.1.19| RP:SCP:REP 370->489|2eyqA2|8e-10|23.4|111/117|c.37.1.19| RP:SCP:REP 491->567|2eyqA1|8e-30|46.8|77/80|b.34.18.1| RP:SCP:REP 568->800|2eyqA3|2e-81|54.1|233/233|c.37.1.19| RP:SCP:REP 801->1011|2eyqA5|2e-72|52.6|211/211|c.37.1.19| RP:SCP:REP 1014->1166|2eyqA6|2e-43|27.5|153/158|d.315.1.1| HM:SCP:REP 3->365|2eyqA4|1.8e-85|37.2|344/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 368->491|2eyqA2|4.1e-26|34.8|115/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 489->567|2eyqA1|1.1e-22|50.6|79/0|b.34.18.1|1/1|CarD-like| HM:SCP:REP 542->803|1gm5A3|5.8e-63|37.5|261/264|c.37.1.19|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 801->1011|2eyqA5|2.2e-52|34.1|211/0|c.37.1.19|2/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 1010->1167|2eyqA6|2.6e-44|35.4|158/0|d.315.1.1|1/1|TRCF domain-like| OP:NHOMO 1824 OP:NHOMOORG 900 OP:PATTERN -------------------------------------------------------------------- 2222222222222221222-22222222222222222222222222222222222222222222222222221222222331211222222232222--2222222222211111111111111122222222222222222222322222222222222222222222222222222222222222222222233333333233332322222233323222222222223222222222222222222222222222222222222222222222222222222222222222222222222222222222233222222222222222223222222222222222222222122223121222222222222222232232223332222222233323333333-33333333332223322222322322222222223322322222222233322222222222211--2223222222222111112232222222222222222222222222222232222222222232222222232222222222222222222322211111111111111222222222222221111222222222222222222222222222223222232222222222322222222221-22222-1111122222222222222222-22222222222222222222222222222222222222222222222222221222222222222--22222222222222223222222222222222222322333222222322232222222222222222222222222222223222222222222222221222222222222222222---1---------------------2222222222212 -------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------2-1-12A2221-1224-22111---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1111 STR:RPRED 94.8 SQ:SECSTR ###################################################EEcccHHHHHHHHHHHHHHccccEEEEEccTcccccccEETTTTEEcccccccHHHHHHHHTTcccEEEEEcGGGGccccccTTTccccEEEEccccccTTTHHHHTTTTTcccccccccTcccccccTTccccEEcccTTcccccEEEccccEcEEEcccccccccccEEEEcccccccccHHHHHHHHHHHTcccccHHHHHHHHHHHHTccccccGGGGHHHHHTccccGGGccccccEEEETTHHHHHHHHHTHHHHHHHHHHHHHHTHTTcTcccGGGTTcccccHHHHHTTcccEEEEcccccHHHHcccEEEEcccTTcccccEEEEEccTTHHHHHHHHHHHHHTTTcEEEEEcccHHHHHHHHHHHHTTTccccccc###cccccccccccEE#EccccccEEETTEEEcccTTTcccccccccTTccccHHHHTTTccccTTcEEEcGGGcEEEEEEEcccEEEEEETTTTEEEETTTcEEEEEEEccccccEEEEETTTccccEEEcHHHHHHHHHHHHHHHHHTccEEEEEHEEEEEETTEEEEEEEEEHHHHHHHHHcccccccccccccccTEcTTccEEEEEEccccccTTTHHHHHHHTHTTTTccEEEEEccHHHHHHHHHHHHHHTccccEEEccccccccHHHHHHHHHccEcccccEEEEEHHHHHTcccTTcccEEEEETTTcccHHHHHHHHHHHHHTEEEEEEcccTTTTccEEEEEEcccTTccccccTTEEEEEccccccEEETTEEEcGGGTcccEEEEEccccHHHHHHHHHHHHTTcTccEEEEcTTcccccccccccEEEEEcTTHHHHccccccEEEEccEEEEEEEEcccccEEEEEEEccHHHHHHHHccccccccccHHHHHHHHHHHHHTccccHHHHHHHHHHHHHcTTcccccccHHHHHHHHHTcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHTTcccccccGGGGGGGGGGGGccccEEcccccccccccccEEcccHHHHHHHHHHHTTTccEEccccccHHHHcccEEccHHHHHTccccccccccTTHHHHHHTHHHHEEEEEcccccHHHHHHHHHHHHHHHHHTc###### DISOP:02AL 1-5,8-16,476-496,562-562,564-566,596-598,600-602,1009-1017,1166-1173| PSIPRED ccccccccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccEEEEcccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEccHHHHcccccHHHHHHcEEEEEEcccccHHHHHHHHHHcccEEccccccccEEEEEccEEEEEcccccccEEEEEEccEEEEEEEEEcccccEEccccEEEEEccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHccccccHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccHHHHHHHHccccEEEEEccccccccccEEEEEcccccccccEEcccccccHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHcccccEEccccHHHHccccccEEEEEEcccccccccccEEEEEcHHHHcccccccHHHHHHHHHHHccHHHcccccEEEEcccccEEEEEEEEEEcccccccEEEEEEccccEEEEEHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHcccccEEEccHHHHHHccccccccEEEEEcHHHccHHHHHHHHHccccccEEEEEccccHHHHHHHHcccEEEEEEcccccccccEEEEEEcccHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHccccEEEEHHHHHHccccccccEEEEEcccccccHHHEEEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHccccHHccHHHHHHHHHHHHHHHHcccccccccccccEEEccccccccHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEEcccccccHHHHHHHHHHcccEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcc //