[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39873.1
DDBJ      :             Uracil-DNA glycosylase superfamily
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  121/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.18.1
:225 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->218 2d3yA PDBj 5e-43 48.7 %
:RPS:PDB   13->221 2d3yA PDBj 8e-35 43.3 %
:RPS:SCOP  47->217 1mtlA  c.18.1.2 * 2e-24 19.2 %
:HMM:SCOP  21->224 1l9gA_ c.18.1.2 * 2.4e-43 39.5 %
:HMM:PFM   48->217 PF03167 * UDG 2.7e-30 32.2 146/150  
:BLT:SWISS 22->218 Y1289_MYCBO 2e-34 44.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39873.1 GT:GENE ABE39873.1 GT:PRODUCT Uracil-DNA glycosylase superfamily GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(2961250..2961927) GB:FROM 2961250 GB:TO 2961927 GB:DIRECTION - GB:PRODUCT Uracil-DNA glycosylase superfamily GB:PROTEIN_ID ABE39873.1 GB:DB_XREF GI:91683571 InterPro:IPR005122 LENGTH 225 SQ:AASEQ MTATRGPLAAVSRPIAEPDRDCPDCPRLAAFRREQRLREPLWHNAPVPSFGDDDATLLIVGLAPGLQGANRTGRPFTGDYAGDLLYATLIEYGFAKGNYEARPDDGLRLVRCRISNAVRCVPPQNKPLPIEINTCRRFLATTIETMPKLRALVMLGRIAHDSTLKAVGLRASQAPFGHGAVHQAGALRLYDSYHCSRYNTNTGVLTPKMFHAVFARVRADLDQPN GT:EXON 1|1-225:0| BL:SWS:NREP 1 BL:SWS:REP 22->218|Y1289_MYCBO|2e-34|44.4|196/268| BL:PDB:NREP 1 BL:PDB:REP 22->218|2d3yA|5e-43|48.7|195/219| RP:PDB:NREP 1 RP:PDB:REP 13->221|2d3yA|8e-35|43.3|208/219| HM:PFM:NREP 1 HM:PFM:REP 48->217|PF03167|2.7e-30|32.2|146/150|UDG| RP:SCP:NREP 1 RP:SCP:REP 47->217|1mtlA|2e-24|19.2|156/157|c.18.1.2| HM:SCP:REP 21->224|1l9gA_|2.4e-43|39.5|185/191|c.18.1.2|1/1|Uracil-DNA glycosylase-like| OP:NHOMO 143 OP:NHOMOORG 142 OP:PATTERN --1---1111111111-21--11--------------------------------1-----111--11 11111----------1111-11111111111111111-11111111---------1----111111111-------------1--------------------------------------------------------11----1-------11-------------------------------11-------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------111111111111111111111111111111111---------111-------------11111------------------111--111-----------------------------1--111-----------1----------------------------------------1------------111--1----------------------1-111111--------------------------------------------------------------11-1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 221 STR:RPRED 98.2 SQ:SECSTR ##ccccccccccHHHHHHHTTccccHHHHHHHHHTTTTcTTccccccccEEcTTccEEEEEccccTTTHHHHccTTTTcHHHHHHHHHHHHTTccccccccTGTcccccccEEEEEccccccGGGcccHHHHHHHHHHHHHHHHTcTTccEEEEEcHHHHHHHHHHHTccTTTccccTTcEEETTTEEEEEEccccHHHHHHTcccHHHHHHHHHHHHHHTHT## DISOP:02AL 1-7,223-226| PSIPRED cccccccccHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHcccccccccEEccEEEEEccEEEEEEccccHHHcccccccHHHHHHHHHHHHHHHcccc //