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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39909.1
DDBJ      :             secretion protein HlyD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  455/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
f.46.1
:393 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   40->380 2v4dB PDBj 2e-76 46.8 %
:RPS:PDB   42->99 3bg5A PDBj 2e-08 13.8 %
:RPS:PDB   141->229 3bg5D PDBj 8e-07 12.6 %
:RPS:PDB   204->381 3bsdA PDBj 1e-17 10.5 %
:RPS:SCOP  57->300 1t5eA  f.46.1.1 * 3e-36 48.3 %
:HMM:SCOP  53->303 1vf7A_ f.46.1.1 * 2.4e-75 53.6 %
:RPS:PFM   67->337 PF00529 * HlyD 2e-13 32.8 %
:HMM:PFM   66->364 PF00529 * HlyD 4.5e-60 31.5 298/306  
:BLT:SWISS 14->380 MEXA_PSEAE 8e-77 45.1 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39909.1 GT:GENE ABE39909.1 GT:PRODUCT secretion protein HlyD GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 2994179..2995360 GB:FROM 2994179 GB:TO 2995360 GB:DIRECTION + GB:PRODUCT secretion protein HlyD GB:PROTEIN_ID ABE39909.1 GB:DB_XREF GI:91683607 InterPro:IPR006143 LENGTH 393 SQ:AASEQ MLKDHSRRSTGLIACAIAVMSLTSCTDQGAAPTATAAALPEVGVVTVEARPVTLTKELPGRITPMRIAEVRPRITGIVTERAFQQGSLVEAGTVLYRIDPAPFQVELDKARAALAKAEAVLYQASRQEDRLKNLLTGQATTQAQYELAVASERQAEAEVSAQKAAVDQAQLNLNLATVRAPIRGRIGRALVTEGALVNPNETSQLATIQQLDPIYADFTQSVGELSQLKHDLAEGRLKKVSSEAARVRLVLDDGTPYDHVGRLLFSDVSVDPGTARVTLRGEFPNPQADLLPGMYVRVQIEEGIDIDGIVVPAQAVQRTTAGSAAIFVVNDVGRAMLQPVRAGRTLANGILIEEGLKPGWRIVVDGFQKFSPGAAVKPVPWESAGADARSKPN GT:EXON 1|1-393:0| BL:SWS:NREP 1 BL:SWS:REP 14->380|MEXA_PSEAE|8e-77|45.1|350/383| COIL:NAA 51 COIL:NSEG 2 COIL:REGION 104->136| COIL:REGION 153->170| SEG 30->38|aaptataaa| SEG 106->119|eldkaraalakaea| BL:PDB:NREP 1 BL:PDB:REP 40->380|2v4dB|2e-76|46.8|327/327| RP:PDB:NREP 3 RP:PDB:REP 42->99|3bg5A|2e-08|13.8|58/1137| RP:PDB:REP 141->229|3bg5D|8e-07|12.6|87/1067| RP:PDB:REP 204->381|3bsdA|1e-17|10.5|171/359| RP:PFM:NREP 1 RP:PFM:REP 67->337|PF00529|2e-13|32.8|256/259|HlyD| HM:PFM:NREP 1 HM:PFM:REP 66->364|PF00529|4.5e-60|31.5|298/306|HlyD| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF00529|IPR006143| GO:PFM GO:0009306|"GO:protein secretion"|PF00529|IPR006143| GO:PFM GO:0016020|"GO:membrane"|PF00529|IPR006143| RP:SCP:NREP 1 RP:SCP:REP 57->300|1t5eA|3e-36|48.3|230/231|f.46.1.1| HM:SCP:REP 53->303|1vf7A_|2.4e-75|53.6|237/237|f.46.1.1|1/1|HlyD-like secretion proteins| OP:NHOMO 1778 OP:NHOMOORG 460 OP:PATTERN -------------------------------------------------------------------- 248-------------------------------------------------------------------------------------4556-7-----117111A4825--------------1111121112-1-----------1-111------------2-3--2-------------------------------------------------------------1--------------------------------------------------------------------------------------------11-2------------------------------111-1----------4336223-----59C98744FBAA633443444445-9C87AA79163-9555457677458B131--422222112222222232323444---------------1--1------------1312555366BBAB5645547798666647977578A-3456145349432434742635541111111425234-141212235344312314454443323312631111111111-1-------12--122433351245213344443855576477573--151-3------43342534555455544-5444555454554444444676332244342344444424223544221243-444444433444--1122123222252643---------------33353231116398AA778966765456611111111123552232232531179778774442222--1-11---------------------------------------------------45 -------------------------------------------------------------------------------------------------------------------------------------------------------------------2-1-------1--------------4-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 342 STR:RPRED 87.0 SQ:SECSTR #######################################EEEEEcccTTcEEcTTcEEEEEEccccEEEEEccccEEccEEcccTTcEEcTTcEEEEcccccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTccccTTcEEEEEEEETTEEEEEEEEcccccccccccccEEEcccccEEEEEcccccEEccTTccccccEEEEEEEEEEccTTccEEEEEEEEEEcccccccccEEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEEEccccEEEEEEEEEEEETTEEEEEEEEEEEEEEEccccEEEEcccHHHHHHccccccccEEEEEEEEEEEEccccHHHHHHHHHHHccccccHHHHH############ DISOP:02AL 1-11,376-394| PSIPRED cccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEcccEEEEEEcccccEEEcccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEEEEEEEEccccEEcccccEEEEEEEEccEEEEEEEEcHHHHHHHHHHHHHccccccccccEEEEEEEccccccEEEEEEEEEEcEEEcccEEEEEEEEEcccccccccccEEEEEEEcccccccEEccHHHEEEcccccEEEEEEccccEEEEEEEEEEEEEccEEEEEEccccccEEEEccHHHcccccEEEEEcccccccccccccc //