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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39910.1
DDBJ      :             Hydrophobe/amphiphile efflux-1 HAE1
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  664/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
d.225.1d.58.44f.35.1
:1049 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->1009 2v50B PDBj 0.0 47.4 %
:RPS:PDB   1->966 3d9bA PDBj 0.0 32.7 %
:RPS:SCOP  47->134 1iwgA1  d.58.44.1 * 8e-17 38.6 %
:RPS:SCOP  183->271 1iwgA5  d.225.1.1 * 4e-25 48.3 %
:RPS:SCOP  321->498 1iwgA7  f.35.1.1 * 5e-35 59.6 %
:RPS:SCOP  567->667 1iwgA3  d.58.44.1 * 3e-24 35.6 %
:RPS:SCOP  720->807 1iwgA6  d.225.1.1 * 4e-23 43.2 %
:RPS:SCOP  814->1009 1iwgA8  f.35.1.1 * 3e-29 49.0 %
:HMM:SCOP  38->134 1iwgA1 d.58.44.1 * 1.9e-20 33.0 %
:HMM:SCOP  135->330 1iwgA2 d.58.44.1 * 1.3e-23 40.2 %
:HMM:SCOP  296->498 1iwgA7 f.35.1.1 * 2.3e-45 36.5 %
:HMM:SCOP  566->669 1iwgA3 d.58.44.1 * 1.4e-26 42.3 %
:HMM:SCOP  670->854 1iwgA4 d.58.44.1 * 2.7e-27 44.4 %
:HMM:SCOP  802->1030 1iwgA8 f.35.1.1 * 6e-43 26.4 %
:RPS:PFM   1->1009 PF00873 * ACR_tran e-174 39.4 %
:HMM:PFM   1->1023 PF00873 * ACR_tran 0 45.7 1012/1021  
:BLT:SWISS 1->1009 MEXB_PSEAE 0.0 47.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39910.1 GT:GENE ABE39910.1 GT:PRODUCT Hydrophobe/amphiphile efflux-1 HAE1 GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 2995391..2998540 GB:FROM 2995391 GB:TO 2998540 GB:DIRECTION + GB:PRODUCT Hydrophobe/amphiphile efflux-1 HAE1 GB:PROTEIN_ID ABE39910.1 GB:DB_XREF GI:91683608 InterPro:IPR001036 InterPro:IPR004764 LENGTH 1049 SQ:AASEQ MSRFFIARPIFAWVVAIFICLAGVLALPFLPVAQYPIIAPPSISIATVYPGASTQNLYYGVTRLIEEELNGAAGILSYESTSDTTGEVEIIASFQPGTDISKASVDVQNRIKRIEPRLPEPVRQEGIAITEASSAILQFVTLTSSDNSLDEIGLGDVATRYVLPELRRLAGVGRVRLFSTERAMRIWLDPDKLLGLGLTAQDVDAAIEAQNAPVASGQLGVQPTPTRQRLQNMVLVKGQLDSLDEFGDIVLRANPNGSTVRLADVARLEVGGLSYSFSTRLDGRPAAAVAVQLAPSGNALATSAAVKARMTELAAFFPPGVKYEVSYDVTPVIAASVKKVLLTLGEAVVLVFLVMFLFLQNIRYTMIPTIVVPIALLGTCAVLFALGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEEGLSPRAATEKAMEQITGAVIGITLVLMAVFVPMAFFPGSVGIMYKQFSASMVVSIGFSAFLALSLTPALCATLLKPVEKGHGHATRGFFGWFNGRLDRATRSYGRATRWMVARGGRFMLVYLALLVGVGFALWRLPGGFVPIDDQGFVMVDVLAPPDASANRTADVVQSVEKTLAATPGIDKITFITGFSFFGQGANTAQAFVTLKDWSERGRNETADALIARVNPEFAKIRDADVSMLAPPPIDNLGTTSGFSFRLQDRSQRGYEALMGAKDALLAAAARSPVLTNVAVEGLPPAPQVRLDIDRRKAAALGVTFAAINSTLSTNLGSSYINDFLNLGRMQRVIVQANDDKRVKPEDLLSYSVKNSTGEMVPFSSFARVAWVVGPTQVVGFDGYPSVRLTGNPAPGYSSGDAIAEMERLMRALPGGFGYTWTGQSLQEKLAGSQAAFLLGLSILFVFLCLAALYESWSIPFAVMLAVPLGVVGSVAAAMLRGLPNDVYFTVGIVTIIGLSAKNAILIIEFAKELRANGTPLVEATITAAELRFRPIIMTSLAFILGVVPLVIASGASGASQQALGTGVLGGMITATVLAVFWVPVFFVVVMRFFTRQQDAQAPSADALPTSPSQSS GT:EXON 1|1-1049:0| BL:SWS:NREP 1 BL:SWS:REP 1->1009|MEXB_PSEAE|0.0|47.4|1009/1046| TM:NTM 13 TM:REGION 5->27| TM:REGION 30->52| TM:REGION 285->307| TM:REGION 333->355| TM:REGION 381->403| TM:REGION 439->461| TM:REGION 474->496| TM:REGION 536->558| TM:REGION 865->887| TM:REGION 892->914| TM:REGION 922->944| TM:REGION 968->990| TM:REGION 1002->1024| SEG 36->46|piiappsisia| SEG 166->177|lrrlagvgrvrl| SEG 348->359|vvlvflvmflfl| SEG 690->703|almgakdallaaaa| SEG 986->996|asgasgasqqa| SEG 1010->1027|vlavfwvpvffvvvmrff| BL:PDB:NREP 1 BL:PDB:REP 1->1009|2v50B|0.0|47.4|1009/1030| RP:PDB:NREP 1 RP:PDB:REP 1->966|3d9bA|0.0|32.7|966/1045| RP:PFM:NREP 1 RP:PFM:REP 1->1009|PF00873|e-174|39.4|990/1014|ACR_tran| HM:PFM:NREP 1 HM:PFM:REP 1->1023|PF00873|0|45.7|1012/1021|ACR_tran| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00873|IPR001036| GO:PFM GO:0006810|"GO:transport"|PF00873|IPR001036| GO:PFM GO:0016020|"GO:membrane"|PF00873|IPR001036| RP:SCP:NREP 6 RP:SCP:REP 47->134|1iwgA1|8e-17|38.6|88/97|d.58.44.1| RP:SCP:REP 183->271|1iwgA5|4e-25|48.3|89/92|d.225.1.1| RP:SCP:REP 321->498|1iwgA7|5e-35|59.6|178/199|f.35.1.1| RP:SCP:REP 567->667|1iwgA3|3e-24|35.6|101/107|d.58.44.1| RP:SCP:REP 720->807|1iwgA6|4e-23|43.2|88/88|d.225.1.1| RP:SCP:REP 814->1009|1iwgA8|3e-29|49.0|196/222|f.35.1.1| HM:SCP:REP 38->134|1iwgA1|1.9e-20|33.0|97/0|d.58.44.1|1/1|Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains| HM:SCP:REP 135->330|1iwgA2|1.3e-23|40.2|102/0|d.58.44.1|2/3|Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains| HM:SCP:REP 296->498|1iwgA7|2.3e-45|36.5|200/200|f.35.1.1|1/2|Multidrug efflux transporter AcrB transmembrane domain| HM:SCP:REP 566->669|1iwgA3|1.4e-26|42.3|104/0|d.58.44.1|1/1|Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains| HM:SCP:REP 670->854|1iwgA4|2.7e-27|44.4|99/0|d.58.44.1|2/2|Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains| HM:SCP:REP 802->1030|1iwgA8|6e-43|26.4|220/223|f.35.1.1|2/2|Multidrug efflux transporter AcrB transmembrane domain| OP:NHOMO 4423 OP:NHOMOORG 673 OP:PATTERN -------------------------------------------------------------------- D9K-------------------------------------------11-1--111-11--11--1--1111------------24356FGIE-I23---23G4B6LBJ8C--------------342344533465111111--1-68555451122222534362E46A3-2-----2-----2111--11212222222222222221111212212112121------6311111111111111111111-----------------------------------------------------------------------6116-------1-1-1221--------1-13122522213-1-----31D3BG77C11111AEOKRI9GLIJGC46574664547-MPFFOILK5A9-FAAC9ADAAA89AK7AA7495655444777777775CB866B61111111111--1-221231113311-111338936755BCHIGIAA7776BBGGAAAA7CDAHCGGN-5GHF7CA9BNEA7A7AFG9FAC8A111111186B6AF75A246764895531694779B779A99E92A72111222222333333333553488B875ID9JBDA6DDEEDGEKKEEGHDJQJLF--1B85B------75677B67999788A77-6887789768797777777CCC773456545666666546455A64564661-877777765777--17343335989G9C652111121111111117778759222A8DEEECCEFCCFDB99BC111111111B5AAB666669CBCBGHCADAA89954441197BB46AA11111111-----------------------------1---111118B6 -1-----------1------------------------------------------------------------------------------------------------------------------------------------------------5----8-2-------5-----------1--B-----7---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1009 STR:RPRED 96.2 SQ:SECSTR cHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccTTccHHHHHTTTHHHHHccccccTTEEEcccEEETTTEEEcccEEcTTccHHHHHHHHHHHHHTTGGGccHHHHHHccEEEEccccccEEEEEEEccccccHHHHHHHHHHHTHHHHHHcTTcccEEEEcccEEEEEEEcHHHHHHTTccHHHHHHHHHHHcccccccEETcccccTTccccEEcccccccccHHHHHTcEEEEcTTccEEEGGGGEEEEEEEcccccEEEETTEEEEEEEEccccccccTHHHHHHHHHHHTTTTcccTTEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccTTTTHHHHHHHHHHHHHHHHHHHTTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcccccccHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHTTTEEEEEEEETcccccccTTEEEEEEEEccGGGcccGGcHHHHHHHHHHHHTTcTTcEEEEEcccccTTccccccEEEEEEEccccTTHHHHHHHHHHHHHHTTcTccEEEEEcccccccEEEEEEcHHHHHHHTccHHHHHHHHHHHHHcEEcccEEccccEEEEEEEEcGGGcccGGGGGGcEEEcccccEEEHHHHEEEEEEccccEEEEETTEEEEEEEEEccTTccHHHHHHHHHHHTTTccTTEEEEEcTHHHHcccTTTcHHHHHHHHHHHHHHHHHHHHTcccHHHHHHTTHHHHHHHHHHHHHTTcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccTTHHHHHHHHHHHHHHHHHHH######################################## DISOP:02AL 500-507,665-674,1028-1050| PSIPRED cHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccccEEcccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccEEEEccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccccccEEEEccccccccEEEEEEEEccccccHHHHHccEEEEcccccEEEEEEEEEEEEcccccccEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccEEEEEEEEEcHHHccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEEEEcccccHHHHHccHHHHHHHHHccccEEEEEcccccccEEEEEEEcHHHHHHccccHHHHHHHHHHHHccEEEEEEEEccEEEEEEEEEcHHHHccHHHHHccEEEcccccEEEEEEEEEEEEEEcccEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcccccccccc //