[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39941.1
DDBJ      :             rare lipoprotein A
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  505/915 : Eukaryota  2/199 : Viruses  1/175   --->[See Alignment]
b.52.1
:314 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   87->177 2bh0A PDBj 3e-12 20.0 %
:RPS:SCOP  71->178 1n10A2  b.52.1.3 * 2e-16 15.1 %
:HMM:SCOP  68->178 1bw3A_ b.52.1.2 * 2.4e-10 26.9 %
:RPS:PFM   102->163 PF03330 * DPBB_1 2e-05 41.1 %
:HMM:PFM   86->174 PF03330 * DPBB_1 1.4e-20 42.1 76/78  
:BLT:SWISS 67->178 RLPA_NEIMB 1e-33 56.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39941.1 GT:GENE ABE39941.1 GT:PRODUCT rare lipoprotein A GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 3027298..3028242 GB:FROM 3027298 GB:TO 3028242 GB:DIRECTION + GB:PRODUCT rare lipoprotein A GB:PROTEIN_ID ABE39941.1 GB:DB_XREF GI:91683639 InterPro:IPR005132 InterPro:IPR012997 LENGTH 314 SQ:AASEQ MGIRERDSYGRAARAVAAAGACLVLANCTQNGKLSRVDPKYGVSSSPRVVGPGEPVPKGGGAYRVGKPYMVAGRMYVPEENTSYRAEGLASWYGNDFHGRLTANGEVFDMASLSAAHPTLPIPSYARVTNLGNGRSLVVRVNDRGPYHGNRLIDVSNRAADLLDFKRNGTARVRVEYVGRAPLEGSDDRQLVATLRSNEPAPAPSTVRIASASAFVPQFAGGGHAVRGDVPLPEGRPYSLGNTSVDMASVSATSEISASRSSRSAGRTLARNQRAVSYDNDGNYADVASRATESETPARGNDEIGSLLSARGLY GT:EXON 1|1-314:0| BL:SWS:NREP 1 BL:SWS:REP 67->178|RLPA_NEIMB|1e-33|56.2|112/239| SEG 10->26|graaravaaagaclvla| SEG 42->61|gvsssprvvgpgepvpkggg| SEG 248->271|asvsatseisasrssrsagrtlar| RP:PDB:NREP 1 RP:PDB:REP 87->177|2bh0A|3e-12|20.0|85/200| RP:PFM:NREP 1 RP:PFM:REP 102->163|PF03330|2e-05|41.1|56/80|DPBB_1| HM:PFM:NREP 1 HM:PFM:REP 86->174|PF03330|1.4e-20|42.1|76/78|DPBB_1| RP:SCP:NREP 1 RP:SCP:REP 71->178|1n10A2|2e-16|15.1|106/133|b.52.1.3| HM:SCP:REP 68->178|1bw3A_|2.4e-10|26.9|108/125|b.52.1.2|1/1|Barwin-like endoglucanases| OP:NHOMO 679 OP:NHOMOORG 508 OP:PATTERN -------------------------------------------------------------------- 221---------------------------------------------------------1--2------1-----------321--------1-----1121--11121---------------22232223212----------2111111111122211121111111-1-----1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------1-1-111111111233442222322222222222222-32443323221122221121112222111----------222222222222212211--------1111111111111111111-21131111111111111111111331111111111112--11113111121-2-1121111111111111111212-1211112212222-111-11111111111-1111111111111111111111111122222111121221222212122221111211--11111------11111111111111111-112111111111111111111111111111111111111111111111111--111111111111---1111112222211221111111111-111111111112222122222222222222222----------1111111112121111111111111111--1-1111111111111111--------------------------------------2 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------2---------- -----1------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 91 STR:RPRED 29.0 SQ:SECSTR ######################################################################################EEEEEEccccccccTTccHccccTTcEEEEcHHHHcGGGcTTTTTTTTEEEEEEEEEEcTTccTTcEEEcHHHHHHHcHHHcGGccEEEEE######################################################################################################################################### DISOP:02AL 1-8,185-235,253-270,287-301| PSIPRED ccccccccccHHHHHHHccccEEEEEEccccccEEEEcccccccccccEEcccccccccccEEEccccEEEccEEEEEccccccEEEEEEEEEcccccccccccccccccccHHHcccccccccEEEEEEcccccEEEEEEccccccccccEEEccHHHHHHHccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEcccccccccccccHHcccHHHccccEEEEccccccccccccccccccccccHHHHHHHHHccccc //