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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39945.1
DDBJ      :             DNA polymerase III, delta prime subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  591/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:346 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->196 1xxhB PDBj 1e-11 28.5 %
:RPS:PDB   45->101 1eg7B PDBj 4e-05 22.0 %
:RPS:PDB   86->197 3c58A PDBj 1e-09 7.2 %
:RPS:SCOP  15->197 1jr3A2  c.37.1.20 * 1e-25 28.0 %
:HMM:SCOP  19->240 1a5tA2 c.37.1.20 * 2e-40 32.0 %
:HMM:PFM   46->195 PF00004 * AAA 1.1e-05 24.8 101/130  
:BLT:SWISS 29->190 HOLB_PSEAE 1e-18 39.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39945.1 GT:GENE ABE39945.1 GT:PRODUCT DNA polymerase III, delta prime subunit GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 3031380..3032420 GB:FROM 3031380 GB:TO 3032420 GB:DIRECTION + GB:PRODUCT DNA polymerase III, delta prime subunit GB:PROTEIN_ID ABE39945.1 GB:DB_XREF GI:91683643 InterPro:IPR000862 LENGTH 346 SQ:AASEQ MSARKAAADIVAKLPRETTALFGHHVAEQALLDAYRGGRIAHAWLIGGAQGIGKATLAYRMARFVLAHRDPLADAVQGAASLDLDPSHPVVRHVAAEAHGGLLTLERSVNDKGVLRNVITVDESRETIGFFGSTAAVEGWRVCIVDTVDDLNASSANALLKVIEEPPQRSLFLLISNSPARVLPTIQSRCRKLMLRPLATADVIAAAVAATDLAPGDPKLADAAAASEGSVSRALTLLGGDALTLHQKTTALLDSLPNVDPRALHALGESIGGTDRATLAAFVDGVDRWIAQRLRAGDANANLPRLARLAEVWEKIGRAARDTEAYNLERKPLVFSVFGLLAEAVR GT:EXON 1|1-346:0| BL:SWS:NREP 1 BL:SWS:REP 29->190|HOLB_PSEAE|1e-18|39.9|148/328| SEG 198->214|latadviaaavaatdla| SEG 234->245|altllggdaltl| SEG 299->310|ananlprlarla| BL:PDB:NREP 1 BL:PDB:REP 15->196|1xxhB|1e-11|28.5|165/364| RP:PDB:NREP 2 RP:PDB:REP 45->101|1eg7B|4e-05|22.0|50/548| RP:PDB:REP 86->197|3c58A|1e-09|7.2|111/269| HM:PFM:NREP 1 HM:PFM:REP 46->195|PF00004|1.1e-05|24.8|101/130|AAA| RP:SCP:NREP 1 RP:SCP:REP 15->197|1jr3A2|1e-25|28.0|164/240|c.37.1.20| HM:SCP:REP 19->240|1a5tA2|2e-40|32.0|206/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 872 OP:NHOMOORG 594 OP:PATTERN -------------------------------------------------------------------- 1111222222212222222-22222222222222222222111222222221222222--222122222212111222121221-112--1--1----1----1---11--111111111----21--------1-1212-221-1-211-1-11--1111112-1111--121111121211112111-11112222222212222222-11112211-13211------2-12212122122222222221111----211-11--------1------------------------------------------------111-------11-1-2-11----2-1--2122111111-22112211--1--1222211111122222222222222222222222-1121121221212222222222222222212122222212222222221122222--1--------------------------11222211111111111-----111-------11-11112111122-111-1---1122112212222222112122222221111111111222222222121111-211111-----1-----------1--1122-11111-11211111-21111112211-1---221-1-111--111-----------------------------------1----------------------------1--11111111111--1211111111112122---111-----1---------11112222222122222221222--111-11-111112222211-2222222222221111112-11111111111111-------1---1-1--111-1----11111--111111111 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------1----1-----------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 189 STR:RPRED 54.6 SQ:SECSTR ########cHHHHTccccGGcGGGHHHHHHHHHHHHTTccccEEEEEccTTccHHHHHHHHHHHHTcccccTTcccccEEEEcccccHHHHHHHHHHHHHHHTcccEEEEccGGGcTHTcHHHHHHHHTTccEEEEEEETTEEEEEETTTEEEcTTTcEEEEEcTTccEEEEEccccEEEEEcTTcccEEEEEEGGG##################################################################################################################################################### DISOP:02AL 1-6,8-11| PSIPRED ccccccHHHHHHHccccHHHHcccHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEcHHHccHHHHHHHHHHHHcccccEEEEEEEccHHHccHHHHHEEEEEEEEEccHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHc //