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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39947.1
DDBJ      :             TatD-related deoxyribonuclease
Swiss-Prot:             

Homologs  Archaea  49/68 : Bacteria  908/915 : Eukaryota  165/199 : Viruses  0/175   --->[See Alignment]
c.1.9
:263 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->253 1yixA PDBj 4e-46 40.7 %
:RPS:PDB   2->231 3bq6B PDBj 6e-40 9.0 %
:RPS:SCOP  3->257 1j6oA  c.1.9.12 * 3e-71 31.9 %
:HMM:SCOP  2->254 1xwyA1 c.1.9.12 * 7.1e-87 45.6 %
:RPS:PFM   3->253 PF01026 * TatD_DNase 9e-61 47.2 %
:HMM:PFM   3->254 PF01026 * TatD_DNase 8.3e-83 46.2 251/255  
:BLT:SWISS 1->253 YABD_BACSU 6e-49 38.4 %
:PROS 2->10|PS01137|TATD_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39947.1 GT:GENE ABE39947.1 GT:PRODUCT TatD-related deoxyribonuclease GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION 3034049..3034840 GB:FROM 3034049 GB:TO 3034840 GB:DIRECTION + GB:PRODUCT TatD-related deoxyribonuclease GB:PROTEIN_ID ABE39947.1 GB:DB_XREF GI:91683645 InterPro:IPR001130 LENGTH 263 SQ:AASEQ MLIDSHCHLDFPDFADDLDGIVARAAASGVGRMVTISTRVRRLPELLAIAERFPNVYCSVGTHPHHVDEEDGISADELVALAQHPKVVAFGEAGLDYFYEHGARDAQERGFREHISAARATGLPLVIHTREADADCGKILADEMGKGAFRAVLHCYTGGRHLAMQAIDLGLSISFTGILTFKKSQSLRDLAAELPADRVMVETDAPYLAPGKYRGKRNEPAYVVETAKVLAEIRGVTLDEITRQTTENFFRLFGKVPPPTATA GT:EXON 1|1-263:0| BL:SWS:NREP 1 BL:SWS:REP 1->253|YABD_BACSU|6e-49|38.4|250/255| PROS 2->10|PS01137|TATD_1|PDOC00836| BL:PDB:NREP 1 BL:PDB:REP 2->253|1yixA|4e-46|40.7|248/265| RP:PDB:NREP 1 RP:PDB:REP 2->231|3bq6B|6e-40|9.0|221/718| RP:PFM:NREP 1 RP:PFM:REP 3->253|PF01026|9e-61|47.2|250/255|TatD_DNase| HM:PFM:NREP 1 HM:PFM:REP 3->254|PF01026|8.3e-83|46.2|251/255|TatD_DNase| GO:PFM:NREP 1 GO:PFM GO:0016888|"GO:endodeoxyribonuclease activity, producing 5'-phosphomonoesters"|PF01026|IPR001130| RP:SCP:NREP 1 RP:SCP:REP 3->257|1j6oA|3e-71|31.9|254/260|c.1.9.12| HM:SCP:REP 2->254|1xwyA1|7.1e-87|45.6|252/0|c.1.9.12|1/1|Metallo-dependent hydrolases| OP:NHOMO 1821 OP:NHOMOORG 1122 OP:PATTERN 111-1122222222222111111---------22111111111-----1111111111111---11-1 1111111111111111111-12111111111111111111111111111111111111111111111111111111111111111111111111111--1121111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111122222222122222211111122212111111111112311111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111211111111111111111111111111111-11111112111121111111111111112111111111111111111111111111111111111111111111111111111111111122222233232222222222222222222222422222222222222222232222222222222111223212121211111111222222222222221111111111111111111111111111223323223333333333333333333333331-2111211111133333333334333433-33333333333433333333333322233333333333333333332333311323233333333111311111111112333222232222212222222222222232333333333333333332212122122333333333333332222222222222211311111111111111132111112-11211111111111211111111111111121 ----442-21211-2-1112121232211111111111-1-1111111121121112--111111----1--1-1---------1-11-2421126--1121111112227244132-111233A23417L4135432-16244334234321412235222273113223245213-2E2211222321421233331 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 257 STR:RPRED 97.7 SQ:SECSTR ccTTcccEEEEcccccccccccccHHHHHHHHHHTTTcccEEEEEHHHTcEETTEEcccHHHHHHHHHHHHHHHHHHHHHHHTTcccEEEEcGGGGccccGGGHHHHHHHHHHHHHTTTHHTccEEEEccccccccHHHHHTTccccEEEEEcccccHHHHHHHHHcccTTcEEEEEEEcccccccHHHHHHHHHHTccEEEEcccGGGcHHccccTTcccccTTcGGGccHHHcccHHHHHHHHTHHHHHHHTccc###### DISOP:02AL 260-264| PSIPRED cEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHcccEEEEEEEcHHHHccccHHHHHHHHHHHHcccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEccccccccHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccc //