[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE39997.1
DDBJ      :             transcriptional regulator, MarR family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  114/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:174 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   47->121 2fbiA PDBj 2e-08 35.1 %
:RPS:PDB   27->161 2a61A PDBj 8e-18 20.1 %
:RPS:SCOP  35->161 2fbkA1  a.4.5.28 * 3e-21 28.3 %
:HMM:SCOP  21->162 2fbkA1 a.4.5.28 * 1.1e-30 32.4 %
:RPS:PFM   60->109 PF01047 * MarR 4e-05 42.0 %
:HMM:PFM   52->110 PF01047 * MarR 3.2e-16 46.6 58/59  
:BLT:SWISS 52->146 YETL_BACSU 8e-20 48.4 %
:PROS 85->119|PS01117|HTH_MARR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE39997.1 GT:GENE ABE39997.1 GT:PRODUCT transcriptional regulator, MarR family GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(3086875..3087399) GB:FROM 3086875 GB:TO 3087399 GB:DIRECTION - GB:PRODUCT transcriptional regulator, MarR family GB:PROTEIN_ID ABE39997.1 GB:DB_XREF GI:91683695 InterPro:IPR000835 LENGTH 174 SQ:AASEQ MKMMEQKHLALLEEAERRAVAPTENLRACFELLALAGAIDRDCAARLAPHRLSEGKFVLLFLLHGQSEGLSPHELADRAGVTRATITGLLDGLERDGFIARRSGLEDRRKIAVVLTDLGRKTAHELFDEHAKWIAALFAGFSADERSTLNGFLQRIRRNLDTGPADTPRPETRT GT:EXON 1|1-174:0| BL:SWS:NREP 1 BL:SWS:REP 52->146|YETL_BACSU|8e-20|48.4|95/167| PROS 85->119|PS01117|HTH_MARR_1|PDOC00861| SEG 9->19|lalleeaerra| BL:PDB:NREP 1 BL:PDB:REP 47->121|2fbiA|2e-08|35.1|74/136| RP:PDB:NREP 1 RP:PDB:REP 27->161|2a61A|8e-18|20.1|134/142| RP:PFM:NREP 1 RP:PFM:REP 60->109|PF01047|4e-05|42.0|50/59|MarR| HM:PFM:NREP 1 HM:PFM:REP 52->110|PF01047|3.2e-16|46.6|58/59|MarR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01047|IPR000835| GO:PFM GO:0005622|"GO:intracellular"|PF01047|IPR000835| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01047|IPR000835| RP:SCP:NREP 1 RP:SCP:REP 35->161|2fbkA1|3e-21|28.3|120/156|a.4.5.28| HM:SCP:REP 21->162|2fbkA1|1.1e-30|32.4|142/0|a.4.5.28|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 132 OP:NHOMOORG 115 OP:PATTERN --------------------------------------------------2----------------- ----1-------------------1--------111-2---------------1--------1---1-----------------------------------------------------------------------------1--------11---------1-1----------------11--------1-------1--1--1------2--1-----1-------12---------------------------1---11--11-------------------------------------------------------1--------11-1-----------------------------------1-----------1---------1------------2---1--1-------11------1-2----1--------11--------------2-------------------------------------111-1111111111-11111111--1111111--112-----21--2--1--2221------------1-21-------------111--22------2-1--------------------------------------------11---------------------------1-----------------------------------------------------------------------------------------1-1-------------------------------------1-----1--------------------------1---11-1-11----------1------------------------------------------------1----11 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 144 STR:RPRED 82.8 SQ:SECSTR ####################HHHHccHHHHHHHHHHHHHHHHHHTTHHHHTccHHHHHHHHHHHcHHccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEETTEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHTcc########## DISOP:02AL 1-6,159-175| PSIPRED ccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccc //