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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE40004.1
DDBJ      :             protein translocase subunit secF
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  780/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.35.1
:369 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   214->267 2dhhA PDBj 9e-04 18.0 %
:RPS:SCOP  148->321 1iwgA7  f.35.1.1 * 4e-16 7.5 %
:HMM:SCOP  99->326 1iwgA8 f.35.1.1 * 4e-36 26.1 %
:RPS:PFM   140->323 PF02355 * SecD_SecF 2e-28 37.2 %
:HMM:PFM   142->320 PF02355 * SecD_SecF 2.5e-66 47.8 178/189  
:HMM:PFM   63->84 PF07549 * Sec_GG 4.5e-09 40.9 22/29  
:BLT:SWISS 30->328 SECD_BRUAB 5e-61 37.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE40004.1 GT:GENE ABE40004.1 GT:PRODUCT protein translocase subunit secF GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(3093116..3094225) GB:FROM 3093116 GB:TO 3094225 GB:DIRECTION - GB:PRODUCT protein translocase subunit secF GB:PROTEIN_ID ABE40004.1 GB:DB_XREF GI:91683702 InterPro:IPR003335 InterPro:IPR005665 LENGTH 369 SQ:AASEQ MTSTQWILIGLGVLIVALTIVSIMDWLPSLRIVPDDTHFDFTQFRRISFPISAVLSIAAITLFFTHGLNFGIDFKGGTLLEVRAHSGTADIPGMRETLGKLGLGDVQLQQFGGPAEVLIRVAEQPGGDAAQQEAVQKVRGALGNSVDYRRVEVVGPRVSSELLAYGMLGLMLAILGILVYLWFRFEWQFALGAMIANVHDIVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALFALLLFGGHAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLGVGTHRMDEPDDKPAKPEPAEKLEKVEAVAALPPPPAEKSKKAAKSRKR GT:EXON 1|1-369:0| BL:SWS:NREP 1 BL:SWS:REP 30->328|SECD_BRUAB|5e-61|37.2|298/758| TM:NTM 6 TM:REGION 5->27| TM:REGION 47->69| TM:REGION 163->185| TM:REGION 198->220| TM:REGION 270->292| TM:REGION 300->322| SEG 7->21|iliglgvlivaltiv| SEG 162->178|llaygmlglmlailgil| SEG 272->288|hvtvtlalfalllfggh| SEG 329->368|epddkpakpepaeklekveavaalppppaekskkaaksrk| RP:PDB:NREP 1 RP:PDB:REP 214->267|2dhhA|9e-04|18.0|50/1022| RP:PFM:NREP 1 RP:PFM:REP 140->323|PF02355|2e-28|37.2|183/185|SecD_SecF| HM:PFM:NREP 2 HM:PFM:REP 142->320|PF02355|2.5e-66|47.8|178/189|SecD_SecF| HM:PFM:REP 63->84|PF07549|4.5e-09|40.9|22/29|Sec_GG| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF02355|IPR003335| GO:PFM GO:0015627|"GO:type II protein secretion system complex"|PF02355|IPR003335| GO:PFM GO:0015628|"GO:protein secretion by the type II secretion system"|PF02355|IPR003335| RP:SCP:NREP 1 RP:SCP:REP 148->321|1iwgA7|4e-16|7.5|173/199|f.35.1.1| HM:SCP:REP 99->326|1iwgA8|4e-36|26.1|218/223|f.35.1.1|1/1|Multidrug efflux transporter AcrB transmembrane domain| OP:NHOMO 847 OP:NHOMOORG 783 OP:PATTERN -------------------------------------------------------------------- 11111--1-----1-1111-11111111111111111111111111111111-11-111111111-11221--------111111111111111111--111111111111111111111111111-11111111111111111111111111111111111111111111-11--1---11111111111111111111111111111111111111111111-1111111111111111111111111111----------------------------------------------------------------------11-1111111111111-111111111--1111111111111111111111111111111111111111111111122222222222-11111111111121122222222211121111111111111111111-1-111221111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111111111111111111111112212111122122222122222212222221-11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111122212222223221111111111111111111111111111111111----------11--111----11---1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------1--2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 50 STR:RPRED 13.6 SQ:SECSTR #####################################################################################################################################################################################################################ccTTHHHHHHHHHHHHHHHHHHHHHHHHTT#TTTcccccTTTHH###HHHHHTT###################################################################################################### DISOP:02AL 1-2,121-137,144-145,151-151,326-343,353-370| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccEEEEEEEccccccHHHHHHHHHHccccccEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccEEEEHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHcc //