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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE40019.1
DDBJ      :             condensin subunit ScpB
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  448/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:389 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   42->181 1t6sA PDBj 3e-13 35.8 %
:RPS:SCOP  42->102 1t6sA1  a.4.5.60 * 7e-09 26.2 %
:RPS:SCOP  109->181 1t6sA2  a.4.5.60 * 1e-04 41.7 %
:HMM:SCOP  26->105 1t6sA1 a.4.5.60 * 3.4e-16 36.2 %
:HMM:SCOP  104->181 1t6sA2 a.4.5.60 * 7e-24 61.0 %
:RPS:PFM   42->190 PF04079 * DUF387 1e-22 45.9 %
:HMM:PFM   36->189 PF04079 * DUF387 4.5e-50 45.8 153/159  
:BLT:SWISS 42->193 SCPBL_COXBU 6e-23 37.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE40019.1 GT:GENE ABE40019.1 GT:PRODUCT condensin subunit ScpB GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(3107825..3108994) GB:FROM 3107825 GB:TO 3108994 GB:DIRECTION - GB:PRODUCT condensin subunit ScpB GB:PROTEIN_ID ABE40019.1 GB:DB_XREF GI:91683717 InterPro:IPR005234 LENGTH 389 SQ:AASEQ MASLAEKRIVEFEPKVEQFEAGTEQQPQTRPEELRLLEALLFASTEPLDQSALAKRMPDGVDVKAALAQLQADYAHRGVNLVRIANKWTFRTAGDLAWLMTRETTETRKLSRAAIEMLAIIAYHQPITRAEIEDIRGVVTSKGTLDVLLETGWIRPRGRRKTPGRPLTFGTTEAFLSQFSLEALGDLPGLEELKGSGLLDTRLPTGFNVPTPSDDPTLREDEDPLESGDLELALAPIADPETDETAAGGAAAEAGQAEGEVETASIGTAEAAEPETAETETGFAEAVDGDIVDDEVRDAEAGLVETADEMSADAEIGFAATDDAESDEVVEAAEPEEAAFESLDDDLSGGEVAESEQADEEPAEPDTDEPDSVASDDEDDVRNGDHEPS GT:EXON 1|1-389:0| BL:SWS:NREP 1 BL:SWS:REP 42->193|SCPBL_COXBU|6e-23|37.5|152/209| SEG 32->41|eelrlleall| SEG 155->166|rprgrrktpgrp| SEG 241->264|etdetaaggaaaeagqaegeveta| SEG 268->286|taeaaepetaetetgfaea| SEG 319->341|aatddaesdevveaaepeeaafe| SEG 353->371|aeseqadeepaepdtdepd| BL:PDB:NREP 1 BL:PDB:REP 42->181|1t6sA|3e-13|35.8|137/162| RP:PFM:NREP 1 RP:PFM:REP 42->190|PF04079|1e-22|45.9|148/160|DUF387| HM:PFM:NREP 1 HM:PFM:REP 36->189|PF04079|4.5e-50|45.8|153/159|DUF387| RP:SCP:NREP 2 RP:SCP:REP 42->102|1t6sA1|7e-09|26.2|61/85|a.4.5.60| RP:SCP:REP 109->181|1t6sA2|1e-04|41.7|72/77|a.4.5.60| HM:SCP:REP 26->105|1t6sA1|3.4e-16|36.2|80/0|a.4.5.60|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 104->181|1t6sA2|7e-24|61.0|77/0|a.4.5.60|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 470 OP:NHOMOORG 449 OP:PATTERN -------------------------------------------------------------------- 11---------------11-11111-1111111-1-------1---------1--1-1----1---1--------1111111-----------------------1--1---------------11111-111--111111---11---------------------------------------11111111111111111111111111111111111111-1111111111--------------111--11-1--111111111111-111--11-------1-------------11111111111111--111-----11111111111-1--1111---11--11111-11-1-111-1111----11-1111-----311113111111111111111112---1-11--451-1114111111111211131111112211111111111111111-----------------------------11111-111111111111111111111111111111111111111111111111111111111111-111111111111-1-----------111111111111111---------------------------1111-111-111-1111111111111111111--11111--------------------------------------------------------------------------------------------11111111111111----------------11111111111111111111111111111------------------------11111111111111---1111111--------11----------1---1111-------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 139 STR:RPRED 35.7 SQ:SECSTR #########################################HHccccccHHHHHcccHHcHHHHHHHHHHHHHHHHHTEEEEEETTEEEEEEcGGGHHHHHHHHccHHHHHHHHHHHHHHHHHHccEEHHHHHHHHT#cccccHHHHHHHTTcEEEEEEcccTTccEEEEEcHHHHHHTTc################################################################################################################################################################################################################ DISOP:02AL 1-4,16-30,205-208,210-215,243-262,268-271,273-274,351-390| PSIPRED ccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHccEEEEEEccEEEEEEcHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHccccccccccccccccHHHHccHHHHHHcccccHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHccccccccccccccccccccccccHHccccHHccccccHHHHHHHHHHHHHHcccccHHHHcccccccccccHHHHHHHccHHHHHHHHHHcccccccccHHHHccccccccccccccccccccHHHHHccccccc //