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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE40031.1
DDBJ      :             secretion protein HlyD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  523/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
b.84.1d.3.1f.46.1
:376 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   45->369 2v4dB PDBj 6e-25 26.7 %
:RPS:PDB   42->102 3bg5A PDBj 3e-07 16.4 %
:RPS:PDB   173->232 1dczA PDBj 3e-04 20.7 %
:RPS:PDB   208->366 3bsdA PDBj 5e-09 11.7 %
:RPS:SCOP  65->120 1gjxA  b.84.1.1 * 3e-05 14.3 %
:RPS:SCOP  127->376 1iu4A  d.3.1.8 * 5e-33 10.4 %
:HMM:SCOP  56->297 1vf7A_ f.46.1.1 * 7.1e-45 32.9 %
:RPS:PFM   71->276 PF00529 * HlyD 3e-08 28.9 %
:HMM:PFM   73->353 PF00529 * HlyD 2.4e-22 21.4 280/306  
:BLT:SWISS 45->368 MDTA_ENT38 7e-53 34.0 %
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE40031.1 GT:GENE ABE40031.1 GT:PRODUCT secretion protein HlyD GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(3123481..3124611) GB:FROM 3123481 GB:TO 3124611 GB:DIRECTION - GB:PRODUCT secretion protein HlyD GB:PROTEIN_ID ABE40031.1 GB:DB_XREF GI:91683729 InterPro:IPR006143 LENGTH 376 SQ:AASEQ MRIRRWIIIAIVLGAAAVAFVALRPYFSEKQIATKGAQRPRVVAVDMVKAVRKPVPVDVDAIGTVTPISSVALKSRLETTILAVHFEDGARVKEGDLLFTLDARQIDAQIEQAEGNLARDRAQLAGAERDLRRYGELIAKGATTQVNLDNAKTQADILAGTIKGAQSALDNLKVQKSFTMIRAPFSGRISAANVKIGNFVRPADTASLATINQMAPVYVTFAVPQRVLVDLRDAMKAESTKVVATIPGSGRSEVGKMAMVENTVDATTGMVTVRGIMDNGNETLWPGTLVNTKLTIRTEDAVAVPTVAVQRSQTGNFVFVVKDGAAHVQPVTVSRTFEGETVIAQGLAGGEDIVTDGQLLLSEGTKVESRSRKAGA GT:EXON 1|1-376:0| BL:SWS:NREP 1 BL:SWS:REP 45->368|MDTA_ENT38|7e-53|34.0|324/411| COIL:NAA 56 COIL:NSEG 2 COIL:REGION 107->134| COIL:REGION 145->172| TM:NTM 1 TM:REGION 6->28| SEG 7->22|iiiaivlgaaavafva| BL:PDB:NREP 1 BL:PDB:REP 45->369|2v4dB|6e-25|26.7|311/327| RP:PDB:NREP 3 RP:PDB:REP 42->102|3bg5A|3e-07|16.4|61/1137| RP:PDB:REP 173->232|1dczA|3e-04|20.7|58/77| RP:PDB:REP 208->366|3bsdA|5e-09|11.7|154/359| RP:PFM:NREP 1 RP:PFM:REP 71->276|PF00529|3e-08|28.9|204/259|HlyD| HM:PFM:NREP 1 HM:PFM:REP 73->353|PF00529|2.4e-22|21.4|280/306|HlyD| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF00529|IPR006143| GO:PFM GO:0009306|"GO:protein secretion"|PF00529|IPR006143| GO:PFM GO:0016020|"GO:membrane"|PF00529|IPR006143| RP:SCP:NREP 2 RP:SCP:REP 65->120|1gjxA|3e-05|14.3|56/81|b.84.1.1| RP:SCP:REP 127->376|1iu4A|5e-33|10.4|250/331|d.3.1.8| HM:SCP:REP 56->297|1vf7A_|7.1e-45|32.9|228/237|f.46.1.1|1/1|HlyD-like secretion proteins| OP:NHOMO 2612 OP:NHOMOORG 528 OP:PATTERN -------------------------------------------------------------------- 58A--------------------------------------------------------------------------------31-246787-A11---22C333H6F48--------------221133111333----------33-111---111-11-221173431-2--1112---1-------1----------------------------------------2--------------------------------------------------------------------------------------------61-3-----------------------1--2122231-1-12-----1-744B225111228BEAB745EBBA655665666667-CF9ACAAC287-C99968A8A87A8B26311A33332122222222245625456------------1--1--1---11-1-11-11343566379CCCC87566599AA77775699B6A9B-378A25545B662446952889661111111757354-152344436644315335534443334643931112111112-1-------231-145764775857526677766D899988BC8E9--18215------63452737778788877-7787888787787777776787433354442344444424223566443483-766666655666--1133134475682A45111111111111111333332311265BACBBABD8CCCA5ABA11111111144666565564A77899869664442222--4-11--11----------------------------------------------295 -------------------------------------------------------------------------------------------------------------------------------------------------------------------2-1-------1--------------3-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 334 STR:RPRED 88.8 SQ:SECSTR ###################################HHHHHcEEEEEEcccTTcEEcTTcEEEEEEccccEEEEEccccEEccEEcccTTcEEcTTcEEEEccTccEEEEEccGGGGGccccHHHHHHHEEEEEEccccTTcEEEEEEEETTEEEEEEEEccccccccccccHccccccccccccccEEEEEEcccTTEEEccccEccccEEEEEEEEEEccTTccEEEEEEEcccccEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEEEccccEEEEEEEEEEETTEEEEEEEEEEEEEEEccccHHHHEEEcTHHccccccccEEEEEEEEEEEEccccHHHHHHHHHHHccccccEE####### DISOP:02AL 1-1,26-46,368-377| PSIPRED cccEEEEEEEEEHHHcEEEEEEEEEcccccccccccccccccccEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEcccEEEEEEcccccEEEcccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEEEccccEEcccccccEEEEEEccEEEEEEEEcHHHHHHcccccccccEEEEEEEcccccEEEEEEEEEEcccccccEEEEEEEEEEccccccccccEEEEEEEEccccEEEEcHHHEEEcccccEEEEEEccEEEEEEEEEEEEEccEEEEEEccccccEEEEccHHHcccccEEEEEcccccc //