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Rhodopseudomonas palustris BisB5 (rpal2)
Gene : ABE40160.1
DDBJ      :             Tetratricopeptide TPR_2
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  88/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
a.118.18
:287 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   119->242 1ouvA PDBj 4e-07 29.0 %
:RPS:PDB   117->242 3e4bC PDBj 2e-18 20.8 %
:RPS:SCOP  132->242 1klxA  a.118.18.1 * 4e-08 23.1 %
:HMM:SCOP  89->278 1ouvA_ a.118.18.1 * 1.7e-28 35.8 %
:RPS:PFM   187->221 PF08238 * Sel1 1e-04 48.6 %
:HMM:PFM   120->154 PF08238 * Sel1 3.4e-10 40.0 35/39  
:HMM:PFM   187->222 PF08238 * Sel1 1.3e-11 52.8 36/39  
:HMM:PFM   225->258 PF08238 * Sel1 5.4e-05 38.2 34/39  
:HMM:PFM   88->114 PF07719 * TPR_2 4.7e-07 48.1 27/34  
:BLT:SWISS 117->238 SE1L1_RAT 5e-09 33.6 %
:REPEAT 2|118->175|186->243
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE40160.1 GT:GENE ABE40160.1 GT:PRODUCT Tetratricopeptide TPR_2 GT:DATABASE GIB00345CH01 GT:ORG rpal2 GB:ACCESSION GIB00345CH01 GB:LOCATION complement(3268231..3269094) GB:FROM 3268231 GB:TO 3269094 GB:DIRECTION - GB:PRODUCT Tetratricopeptide TPR_2 GB:PROTEIN_ID ABE40160.1 GB:DB_XREF GI:91683858 InterPro:IPR006597 InterPro:IPR013026 InterPro:IPR013105 InterPro:IPR013245 LENGTH 287 SQ:AASEQ MTRFAGVRSIAQGFTQGIARGLVVPLLLAGAAAPALAQSADLVLCDRIAADPADPDKPSGVRGVADIAPADIETAIRYCRTAAGSSRRALYALGRAYAANGQSADAIAAFRKAADKGSSSAMVELGVAYATGAGVAKDDGRARQLFERAADAGNPRGVSNLAALGGGTTSDPGKTRALLAKGAETNAEAQYQLGMMLAEGVGGPKDDVAARTLFEKASAQGHAGALERMGAFAQAGRGGPQDTAAAKGFYEKAAALGNSDAAAALKRADCPFVIKDKQGKLVSNLCF GT:EXON 1|1-287:0| BL:SWS:NREP 1 BL:SWS:REP 117->238|SE1L1_RAT|5e-09|33.6|122/794| NREPEAT 1 REPEAT 2|118->175|186->243| SEG 21->37|glvvplllagaaapala| SEG 87->99|rralyalgrayaa| SEG 104->116|adaiaafrkaadk| SEG 244->264|aaakgfyekaaalgnsdaaaa| BL:PDB:NREP 1 BL:PDB:REP 119->242|1ouvA|4e-07|29.0|124/265| RP:PDB:NREP 1 RP:PDB:REP 117->242|3e4bC|2e-18|20.8|125/405| RP:PFM:NREP 1 RP:PFM:REP 187->221|PF08238|1e-04|48.6|35/36|Sel1| HM:PFM:NREP 4 HM:PFM:REP 120->154|PF08238|3.4e-10|40.0|35/39|Sel1| HM:PFM:REP 187->222|PF08238|1.3e-11|52.8|36/39|Sel1| HM:PFM:REP 225->258|PF08238|5.4e-05|38.2|34/39|Sel1| HM:PFM:REP 88->114|PF07719|4.7e-07|48.1|27/34|TPR_2| RP:SCP:NREP 1 RP:SCP:REP 132->242|1klxA|4e-08|23.1|108/133|a.118.18.1| HM:SCP:REP 89->278|1ouvA_|1.7e-28|35.8|190/0|a.118.18.1|1/1|HCP-like| OP:NHOMO 148 OP:NHOMOORG 99 OP:PATTERN -------------------------------------------------------------------- ---------------------------------------------------------------------------------1--1-----------7---------------------------3---1-1------------------------------------------------------------------------------------------2-------------------------------------------------------------------------------------------------------------------------------------------------------------------112111212111111111111111-22-221--11--2-------1-1--1-11-----------------------1------------------------------------1--------1-------------------1--------------1-------1---------------2-------2---3-1--1--11---11---------------------11111111-------------1---------------------------1------------------2-------------1-----------1-----------------1-------------------------------------3333----1-------1-11------11---12------------------------------------------------------------1-----------------------------------------------------11- ------1------------------------------------------------------------------------------------------------411-122------------------------------------------------1---------1----------8------------------7 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 126 STR:RPRED 43.9 SQ:SECSTR ####################################################################################################################TcTHHHHHHHHHHHHcGGGcccHHHHHHHHHHHHHTTcHHHHHHHHHHcccccccHHHHHHHHHTTTTTcHHHHHHHHHHHHHTccccccHHHHHHHHHHHHHTTcTTTTHHHHHHHHTcTTcccc############################################# DISOP:02AL 1-5| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHcccEEEEcccccHHHHccc //