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Streptomyces avermitilis MA-4680 (save0)
Gene : BAC67918.1
DDBJ      :             putative IS110 family IS900-like transposase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  49/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.55.1
:396 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   3->175 2b0tA PDBj 4e-15 17.5 %
:RPS:SCOP  1->59 2ch5A2  c.55.1.5 * 9e-05 15.3 %
:RPS:PFM   268->313 PF02371 * Transposase_20 4e-04 44.4 %
:HMM:PFM   266->351 PF02371 * Transposase_20 4.6e-21 38.8 85/87  
:HMM:PFM   74->166 PF01548 * Transposase_9 4.8e-20 38.0 92/96  
:HMM:PFM   200->308 PF03507 * CagA 0.00063 22.9 109/190  
:BLT:SWISS 4->395 YI90_MYCPA 2e-86 56.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC67918.1 GT:GENE BAC67918.1 GT:PRODUCT putative IS110 family IS900-like transposase GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(243581..244771) GB:FROM 243581 GB:TO 244771 GB:DIRECTION - GB:PRODUCT putative IS110 family IS900-like transposase GB:NOTE IS110 family (244816..242245) Inverted repeat sequence (13/17 bp). Target sequence (GG). GB:PROTEIN_ID BAC67918.1 LENGTH 396 SQ:AASEQ MPQIWAGVDIGKEHHHCVVVDERGERLLSRRVFNDEPALLELIADVLALCEDTLWAVDINHGGAALLISLLLSHDQPMVYITGLAVHQASAAYRGQGKTDEKDAFVIADQARMRQDLGLLRPGDEIAIDLRTLTARRLDLVNDRTRQTNRLRAQLLEFFPALERALNLSKKGPVMLLTGYQTPTAIRRSGARRIGTWLKNRKVKNAAALAETAVEAARSQHTALPGETLAAAVVARIAKGVQALDQEIAELDALIEARFNDHRHATVIRSLPGMGTLLGAEFIAATGGDLEAFGTADRLASFAGLSPVPRDSGRVSGNMRRPRRYHRGLLRAFYLSAMASLRTCAASQAYYGRKRNEGKGHKQALLALARRRANVLWAMLRDGECYEVRPTVTAAT GT:EXON 1|1-396:0| BL:SWS:NREP 1 BL:SWS:REP 4->395|YI90_MYCPA|2e-86|56.9|392/399| SEG 61->74|hggaallislllsh| SEG 129->140|dlrtltarrldl| SEG 206->217|aaalaetaveaa| SEG 320->331|rrprryhrgllr| SEG 364->373|allalarrra| RP:PDB:NREP 1 RP:PDB:REP 3->175|2b0tA|4e-15|17.5|137/735| RP:PFM:NREP 1 RP:PFM:REP 268->313|PF02371|4e-04|44.4|45/87|Transposase_20| HM:PFM:NREP 3 HM:PFM:REP 266->351|PF02371|4.6e-21|38.8|85/87|Transposase_20| HM:PFM:REP 74->166|PF01548|4.8e-20|38.0|92/96|Transposase_9| HM:PFM:REP 200->308|PF03507|0.00063|22.9|109/190|CagA| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF02371|IPR003346| GO:PFM GO:0004803|"GO:transposase activity"|PF02371|IPR003346| GO:PFM GO:0006313|"GO:transposition, DNA-mediated"|PF02371|IPR003346| RP:SCP:NREP 1 RP:SCP:REP 1->59|2ch5A2|9e-05|15.3|59/117|c.55.1.5| OP:NHOMO 196 OP:NHOMOORG 49 OP:PATTERN -------------------------------------------------------------------- ----221211-8----L----2--15------33-6--4------------1--2-2---------4342-----6-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------7----------------------------------------------------------------2-----------------------------------------------------------------------------83----1---22--262--5-34-----------------------------------------------------------------------------------------------------------------------------------------------------1----1-12-------1----------------------------------------9E5755B----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 137 STR:RPRED 34.6 SQ:SECSTR ##GcGGGEEEccccEEEEEEcTTccEEEEEEEcTcEEEEEEEcHHHHHHHHHHEEEccTTcHH###################HHHHHHHHHHHHTTcccTTccEEEEcHHHHHHHHHHHHHTTcccE#################EEEcHHHHHHHHHHHHHHHHccccEEEEEcT############################################################################################################################################################################################################################# DISOP:02AL 92-96, 313-322, 392-396| PSIPRED ccEEEEEEEEcccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHcccHHHcccHHHHHHHccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccc //