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Streptomyces avermitilis MA-4680 (save0)
Gene : BAC67935.1
DDBJ      :             putative reverse transcriptase homolog; similar to GII intron
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  218/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
e.8.1
:588 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   33->422 2e9tA PDBj 5e-37 11.9 %
:RPS:PDB   501->567 1bxiB PDBj 6e-09 22.0 %
:RPS:SCOP  33->419 1u09A  e.8.1.4 * 2e-28 12.6 %
:HMM:SCOP  83->430 1xr7A_ e.8.1.4 * 5.3e-50 28.1 %
:RPS:PFM   185->333 PF00078 * RVT_1 3e-07 32.4 %
:RPS:PFM   349->424 PF08388 * GIIM 7e-12 40.8 %
:RPS:PFM   535->570 PF01844 * HNH 2e-04 41.7 %
:HMM:PFM   119->333 PF00078 * RVT_1 5.6e-46 35.5 203/214  
:HMM:PFM   350->427 PF08388 * GIIM 3.2e-23 32.1 78/80  
:HMM:PFM   502->569 PF01844 * HNH 2.3e-16 41.7 48/52  
:BLT:SWISS 67->375 YKFC_ECOLI 4e-38 39.8 %
:BLT:SWISS 539->577 ANRX_ANASP 6e-04 41.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC67935.1 GT:GENE BAC67935.1 GT:PRODUCT putative reverse transcriptase homolog; similar to GII intron GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(264551..266317) GB:FROM 264551 GB:TO 266317 GB:DIRECTION - GB:PRODUCT putative reverse transcriptase homolog; similar to GII intron GB:NOTE PF00078: Reverse transcriptase (RNA-dependent DNA polymerase) GB:PROTEIN_ID BAC67935.1 LENGTH 588 SQ:AASEQ MTELAIAEPRMNGPEGDTEFWHSIDWSREETSVKRLRQRIFRAAREGDMKQVRNLQKLMRRSRANTLTSVRRVCQVSTGKKTAGIDGQKALSPEKRGKTARQILADPMSHPQPVRRVYIPKANGKRRPLGIPVIRDRVDQARFKNALEPEWEARFEARSYGFRPGRGAWDAIEMIFNVAGRRTAKRLWVLDADLSAAFDHISHQHLMDSVGLFPGRRQIQQWLRAGVMEDGRFVSTPEGTPQGGVISPLLMNIALHGMGEVIGANRPWNAKTTSPTLVRYADDFVVFCTTENEAIKAKQDLAAWLEPRGLSFNEEKTRVVHLSSGVDFLGFNVGRFRQKLIIKPSRDALQRARKRISTTARENSGSPTESLVRALSPFVRGWSTYYRTVCSKETFNLLDAHTFEVLKRWAMRRHRRKPWGWIKRRYWGTFQPGRSSKWVFGTPEHYLPQASWMPIQRHTLVKDDASPDDQELEEYWGNRRRKRIQAVGEPKKILSLAYRQRGLCPRCGLDLIDGVGFDPDDVQDWANWFTGSLRAIHVHHLTYRSKGGSDHPSNLELIHTTCHRQAHAGDRKYDAHRRPQASLSRMRG GT:EXON 1|1-588:0| BL:SWS:NREP 2 BL:SWS:REP 67->375|YKFC_ECOLI|4e-38|39.8|299/376| BL:SWS:REP 539->577|ANRX_ANASP|6e-04|41.0|39/76| RP:PDB:NREP 2 RP:PDB:REP 33->422|2e9tA|5e-37|11.9|377/474| RP:PDB:REP 501->567|1bxiB|6e-09|22.0|50/129| RP:PFM:NREP 3 RP:PFM:REP 185->333|PF00078|3e-07|32.4|139/181|RVT_1| RP:PFM:REP 349->424|PF08388|7e-12|40.8|76/80|GIIM| RP:PFM:REP 535->570|PF01844|2e-04|41.7|36/49|HNH| HM:PFM:NREP 3 HM:PFM:REP 119->333|PF00078|5.6e-46|35.5|203/214|RVT_1| HM:PFM:REP 350->427|PF08388|3.2e-23|32.1|78/80|GIIM| HM:PFM:REP 502->569|PF01844|2.3e-16|41.7|48/52|HNH| GO:PFM:NREP 5 GO:PFM GO:0003723|"GO:RNA binding"|PF00078|IPR000477| GO:PFM GO:0003964|"GO:RNA-directed DNA polymerase activity"|PF00078|IPR000477| GO:PFM GO:0006278|"GO:RNA-dependent DNA replication"|PF00078|IPR000477| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01844|IPR002711| GO:PFM GO:0004519|"GO:endonuclease activity"|PF01844|IPR002711| RP:SCP:NREP 1 RP:SCP:REP 33->419|1u09A|2e-28|12.6|374/476|e.8.1.4| HM:SCP:REP 83->430|1xr7A_|5.3e-50|28.1|310/0|e.8.1.4|1/1|DNA/RNA polymerases| OP:NHOMO 875 OP:NHOMOORG 227 OP:PATTERN -----------------------------------------------6-4A13--------------- 2-4-1------------11-1-----11111-1-----24--3C-----------------1----11----------------------43--11-----1--------------------------151126-5-1111---5-865-417------------9128-I---------------------1--2-2217221C4-37-5-----1-33-25--------6---------------------1------------BC---------212----12----1-11111-11--------1---------------8113-----1--2-1133----1--1-Q-DI1733-3A-P-1AF-------1-----------6-22-----------------7-------------3--21-1---46-------1-2-------------------1------------O-------------4-95--31------7-3356---------3-------23---2---1----2---6---1-4-------------2--3-3--2-28----------2---2J5-----35-1------------------------------61----1--316--2--11----713----------------13----11-111-8---1----4-F8--1------2-----1------------------22222-21--111-11-1-----S--------21-17---------------1-----------81-1-------9--152------------1--4-----h---1----------------6-------------------11-----------------------53---------- --------------------------------------------11------------------------------2---------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 517 STR:RPRED 87.9 SQ:SECSTR ################################HHHHHHHHccccccccHHHHHHccTTcccccTTcHHcccTTGGGGTccHHHHEETTTTEEcHHHHHHHHHHHTTccccEcccEEEHHHHHHTcccEEEEccHHHHHHHHHHHHHHHHHHHHTccTTTTTccTTccHHHHHHHHHHHHHTccTTccEEEEEEEccTTTTccHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEEEccccTTcTTHHHHHHHHHHHHHHHHHHTTcccccTTccEEEEETTEEEEEEcccccHHHHHHHHHTTTccEEEcccTTccccccccGGcEETTEEEEEcTTTccEEEEccGcccHHHHHHHHTEEETTcHHHHHHHHHHHHGGGcHHHHHHHHGGHGcTTcccccHHHHHHHHHHHHcHHTHHHTccTTHHH#ccccccccccTTcccccccccccHHHHHHTTcccccHHHHH#HHHHHHHTTcTTTGGGccHHHHHHHHTTTTccccccGGGccTc################TccccEEEEcccTTTTcccccGGEEEEcHHHHHHcc##################### DISOP:02AL 1-20, 587-588| PSIPRED cccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEHHHccccccHHHHHHHHHHccccHHHHHHHHHHHEEcccEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccEEEEEccHHHHHHHHHHHHHHHHHcccEEcHHHcccccccccEEEccEEEccccccEEEEEcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccEEEEcccccEEEEcccccHHcccccHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEcHHHHHHHHcccccccccccccHHHHHccc //