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Streptomyces avermitilis MA-4680 (save0)
Gene : BAC67946.1
DDBJ      :             putative DNA-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  16/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.110.2d.110.3
:379 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   1->71 3c2wD PDBj 3e-04 9.7 %
:RPS:PDB   224->282 3e0yB PDBj 3e-09 15.5 %
:RPS:SCOP  1->73 1s66L  d.110.3.2 * 2e-04 20.8 %
:RPS:SCOP  223->290 1mc0A1  d.110.2.1 * 2e-07 17.6 %
:HMM:SCOP  1->82 1v9yA_ d.110.3.2 * 0.00082 28.6 %
:HMM:SCOP  121->286 1mc0A2 d.110.2.1 * 2.6e-17 30.9 %
:RPS:PFM   251->312 PF11729 * Capsid-VNN 3e-04 33.3 %
:HMM:PFM   104->272 PF01590 * GAF 8.9e-10 21.1 133/154  
:BLT:SWISS 211->288 FHLA_SALTY 3e-04 31.2 %
:BLT:SWISS 278->322 Y1364_MYCTU 2e-04 40.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC67946.1 GT:GENE BAC67946.1 GT:PRODUCT putative DNA-binding protein GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 276877..278016 GB:FROM 276877 GB:TO 278016 GB:DIRECTION + GB:PRODUCT putative DNA-binding protein GB:NOTE PF01590: GAF domain GB:PROTEIN_ID BAC67946.1 LENGTH 379 SQ:AASEQ MLGRSFEELVGQDFHDLLHRDSYGHATPRTRCQLRDALLAGRTEHGDSEWFARGDGTLVRLSWLVAPFSSESEGAGALMLLYGSNRGVSDEGDDEVPAPLTELDRLALLAETTTQLTSTLDVDEAMRRLAALTVPRLADWAVIDLLTERDEVRRALVTEHKDGILVGREDLQGPMPPVPEESPMPLSRALRGAASSLAGPATYQGPPDSGIAVEQGRLFSETGMHSAVIAPIRGLRDVLGALTLGRSTRPDAFTAADLPLLEDITRRAGLALDNARLYQRQRKVAETMQRHLLPQLPTVPGVGMTARYVPAPHASSVGGDWYDAFALTDNSHALASATLSGTTSTPQPAWRRSATCCAPSHGPSPRPRPAPSSPSSTTP GT:EXON 1|1-379:0| BL:SWS:NREP 2 BL:SWS:REP 211->288|FHLA_SALTY|3e-04|31.2|77/692| BL:SWS:REP 278->322|Y1364_MYCTU|2e-04|40.0|45/653| SEG 106->120|lallaetttqltstl| SEG 174->201|pmppvpeespmplsralrgaasslagpa| SEG 331->345|shalasatlsgttst| SEG 358->378|apshgpsprprpapsspsstt| RP:PDB:NREP 2 RP:PDB:REP 1->71|3c2wD|3e-04|9.7|62/478| RP:PDB:REP 224->282|3e0yB|3e-09|15.5|58/150| RP:PFM:NREP 1 RP:PFM:REP 251->312|PF11729|3e-04|33.3|57/275|Capsid-VNN| HM:PFM:NREP 1 HM:PFM:REP 104->272|PF01590|8.9e-10|21.1|133/154|GAF| RP:SCP:NREP 2 RP:SCP:REP 1->73|1s66L|2e-04|20.8|72/119|d.110.3.2| RP:SCP:REP 223->290|1mc0A1|2e-07|17.6|68/187|d.110.2.1| HM:SCP:REP 1->82|1v9yA_|0.00082|28.6|77/0|d.110.3.2|1/1|PYP-like sensor domain (PAS domain)| HM:SCP:REP 121->286|1mc0A2|2.6e-17|30.9|152/0|d.110.2.1|1/1|GAF domain-like| OP:NHOMO 81 OP:NHOMOORG 16 OP:PATTERN -------------------------------------------------------------------- 1---7------------------------------------31381--1------------1--12-JH87-----------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 221 STR:RPRED 58.3 SQ:SECSTR HccccccTTccccHHHHcHHHHH#########HHHHHHHcccccEEEEEEETTEEEEEEEEEETTEEEEEE#################################################HHHHHHHHHHHHHHHHHEEEEEEEEE###EEETTEEEEEEEEEEEcTTccHHHHcccGGGccEEcTTccHHHHHHHHTccEEEccccGGGcTTccHHHHHHTcccEEEEEEEEccccEEEEEEEEccTccccccHHHHHHHHHHHHHHHHHHHHHHHHTTcc################################################################################################# DISOP:02AL 361-379| PSIPRED cccccHHHHHcccHHHHccccccccccHHHHHHHHHHHHHcccEEEEEEEEEEcccEEEEEEEEEEEEcccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEEEEcccccccccHHHcccccccccccccHHHHHHccccEEEEccHHHcccccccccHHHHHHHHHccccEEEEEEEEEccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccEEEEEEEccccEEEEEEEEEEcccccHHHHHHHHHccccccccccccccccccccccccc //