[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Streptomyces avermitilis MA-4680 (save0)
Gene : BAC68000.1
DDBJ      :             putative IS30 family ISLxx5-like transposase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  248/915 : Eukaryota  1/199 : Viruses  1/175   --->[See Alignment]
a.4.1c.55.3
:706 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   380->436 1co0A PDBj 5e-04 16.7 %
:RPS:PDB   582->699 1bl3B PDBj 7e-04 14.3 %
:RPS:SCOP  361->461 1pdnC  a.4.1.5 * 1e-07 23.1 %
:HMM:SCOP  106->246 1c0mA2 c.55.3.2 * 7.2e-07 17.3 %
:HMM:SCOP  362->418 1k78A1 a.4.1.5 * 6.8e-06 40.4 %
:HMM:SCOP  579->694 1c6vA_ c.55.3.2 * 2.5e-07 25.5 %
:HMM:PFM   105->201 PF00665 * rve 3.1e-13 22.4 85/120  
:HMM:PFM   582->694 PF00665 * rve 4.4e-09 24.0 96/120  
:HMM:PFM   389->414 PF08281 * Sigma70_r4_2 0.00057 34.6 26/54  
:BLT:SWISS 103->295 TRA6_BACST 2e-18 32.3 %
:BLT:SWISS 380->705 TRA8_RALME 2e-50 45.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68000.1 GT:GENE BAC68000.1 GT:PRODUCT putative IS30 family ISLxx5-like transposase GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(339819..341939) GB:FROM 339819 GB:TO 341939 GB:DIRECTION - GB:PRODUCT putative IS30 family ISLxx5-like transposase GB:NOTE IS30 family (339207..342900) Inverted repeat sequence (13/17 bp). GB:PROTEIN_ID BAC68000.1 LENGTH 706 SQ:AASEQ MRAWMATRAMISWLRASSTRVRRPLRVSLGSGAGSRGAVVRVMWRAGSRKILRSRRSARKSDRSGGWTECRRAASVPSRTAVMWLLVISRRSVIPSAAQAFRTGAYSRDPFCCFTTGQDLATFFDCHRLAFAHFGGVPMSIVYDRTKTVVRRHVAPGEAVPLHPEAVAFAGHYDFDVDVLAAYRPQGKGRVERQVGIVRDHVLAGRAFSSIEEINAAFAAWVPLRRAKVHGTHGEVIGHRAVRDHTALRPLPTTPYLVTQRHLRHVGKDCLVAFDANLYSVPARKIRPRQLVEVRATKSQVTLHSTIADRDGQTMLAVHPRAVGRGARIVDETHWDGLAEEAAAAVGVSQAAGCRWFCHGGGMPPMDLAPQSGRYLSFHEREEISILKAQGIGVRETARRLGRDPSTVSRELRRNAATRGGRLDYRASVAQWKADLVARRPKTAKLAANDRLRDYVQARLSGQVSRPDGTVLGPESPRWKGRNKPHRGDRQWVMAWSPEQIANRLKVDFPDDESMRISHEAIYQALFVEGRGALKRELVACLRTGRALRVPRARSKRKAWAHVTPEVLISERPAEADDRAVPGHWEGDLLIGLERSAIGTLVDRTTRYTVLVHLPRQDGYGVVPRTKNGPPLAGYGAVTMKDALAATIGTLPEQLWRSLTWDRGKELSAHAQFTIETGVPVYFADPHSPWQRGVGVQVNVALARFP GT:EXON 1|1-706:0| BL:SWS:NREP 2 BL:SWS:REP 103->295|TRA6_BACST|2e-18|32.3|189/400| BL:SWS:REP 380->705|TRA8_RALME|2e-50|45.8|273/339| SEG 53->64|rsrrsarksdrs| SEG 339->353|aeeaaaavgvsqaag| RP:PDB:NREP 2 RP:PDB:REP 380->436|1co0A|5e-04|16.7|54/105| RP:PDB:REP 582->699|1bl3B|7e-04|14.3|98/143| HM:PFM:NREP 3 HM:PFM:REP 105->201|PF00665|3.1e-13|22.4|85/120|rve| HM:PFM:REP 582->694|PF00665|4.4e-09|24.0|96/120|rve| HM:PFM:REP 389->414|PF08281|0.00057|34.6|26/54|Sigma70_r4_2| RP:SCP:NREP 1 RP:SCP:REP 361->461|1pdnC|1e-07|23.1|91/123|a.4.1.5| HM:SCP:REP 106->246|1c0mA2|7.2e-07|17.3|127/0|c.55.3.2|1/2|Ribonuclease H-like| HM:SCP:REP 362->418|1k78A1|6.8e-06|40.4|57/63|a.4.1.5|1/1|Homeodomain-like| HM:SCP:REP 579->694|1c6vA_|2.5e-07|25.5|94/0|c.55.3.2|2/2|Ribonuclease H-like| OP:NHOMO 1155 OP:NHOMOORG 252 OP:PATTERN --------------------------------------------------K-1--------------- --41131-3517-4-4211-13---221221-2636-898-132---4--8F-1-13----14---F211-----56-----1-----11-1-------------1----------------------1L2---------------1-----8------------------------------11------11---------1-1---6-3---------2-1B-------------6--------------3--I-NF-G-2-1-114-3-------1---------------------------------------------A--------------------D--M--4----11--2---233839---1--4113-------2-35---2-------------2-13N----------2222-23-174------1--2--1--22222222595------------------------1-----------1F4-----13-3-6-4------511--1-1-u5--1E-12-44--A-14333-25G-1------E5A7---2R-2--2--1-2-2-------31822-43--23212--------------------------1-5--O----16-Q122-3-2--1-----------22--------------31113---1--143--1---311111311----1--6-------------------------------------------55--4-3-2--4--6----------1-1---8-------4-------21----18N3-j---------A--1------1-61-------FFG--------22-----------------------------------------7----------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------ STR:NPRED 152 STR:RPRED 21.5 SQ:SECSTR ###########################################################################################################################################################################################################################################################################################################################################################################################HHHHHHHHHHTccccccHHHHHTccHHHHHHHHHHH###HHccccHHHHHHHTTTcc#################################################################################################################################################TTEEEEEE#EEETTEEEEEEEETTTccEEEEEEccccHHHHHHHHHHHHHHccccEEEc###################cccTTTTcHHHHHHHHHHTcEEEccHHHHHHHHHHHHHHH####### DISOP:02AL 543-562| PSIPRED ccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHcccccccccEEEEEEEEEEEccccEEEEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEcccEEEEEEEccccccccHHHHHHHHHHHcccEEEEccccccccccEEHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccEEEEEEEEcccEEEEEccEEEEccHHHHcccEEEEEEEEccEEEEEEEEEcccccEEEEEEccccccccEEEcHHHcccHHHHHHHHccccccHHHHHHHHccccccHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHEEccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHcccccccccccccccccccccccccccHHcccHHHHHHccccccEEEEEEEccccEEEEEEEEcccEEEEEEEccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHEEcccccHHHHHHHHHHHHHcccEEEEcccccccccccccccccEEEcc //