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Streptomyces avermitilis MA-4680 (save0)
Gene : BAC68022.1
DDBJ      :             putative IS4 family ISFsp6-like transposase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  54/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.55.3
:542 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   287->351 3ecpA PDBj 6e-07 15.6 %
:RPS:SCOP  287->406 1mm8A  c.55.3.4 * 2e-05 12.4 %
:HMM:SCOP  201->358 1musA_ c.55.3.4 * 4.1e-15 28.0 %
:RPS:PFM   290->348 PF01609 * Transposase_11 6e-04 42.6 %
:HMM:PFM   139->348 PF01609 * Transposase_11 1.7e-16 23.5 183/207  
:BLT:SWISS 26->438 INSG_ECOLI 4e-27 29.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68022.1 GT:GENE BAC68022.1 GT:PRODUCT putative IS4 family ISFsp6-like transposase GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(371009..372637) GB:FROM 371009 GB:TO 372637 GB:DIRECTION - GB:PRODUCT putative IS4 family ISFsp6-like transposase GB:NOTE IS4 family (372771..370996) Inverted repeat sequence (36/37 bp). Target sequence (GAGTACTTT); same as SAV365. GB:PROTEIN_ID BAC68022.1 LENGTH 542 SQ:AASEQ MPVQCSTVTLTSSITVADGIFAPGHLGELTQQLPFELVDDVLERAGGAQHRLRLLPSRVGVYFVLALALFPQLGYVRVWDKLTAGLRGILHRRPSEKALREVRRRLGVAPLRLLFETLAGPVAQPITPGVRYRCWRTVAFDGCSSTKAPDRPRVCAWLGKHKHRYGTDGYPMLKIMVLCETGTRALLGAVFGPTPEKETGYAEQLLPLLDGGMLLLNDRGFDSDDFLAKAAATGAQLLVRLKGTRTPARWALLPDGSFLTRINGTRLRVIDAHIAVTTAKGLRLEGHYRLATTLTDHRRYPAVELVELYHERWEIESAFYSLRHTLQCGLVLRSQDVAGIQQELWAHLTVYQALRRAMVEAVETLPGTDPDRASFTVALETAKEQLITAANVLPDAGPGRITSALLHDLLPPRQARVNPRRVKCPISRYAAPPDQAQAFGASRITSIAVTVHSSAGTGSDGRRDHTLQLLRTNPLRTWRACEIARGIGLDDARGLRAELGRWVREGILRRTGRGIYTLEPEWITPDLHHPSVPPHLTTADRP GT:EXON 1|1-542:0| BL:SWS:NREP 1 BL:SWS:REP 26->438|INSG_ECOLI|4e-27|29.6|399/442| TM:NTM 1 TM:REGION 53->75| SEG 205->216|llplldggmlll| RP:PDB:NREP 1 RP:PDB:REP 287->351|3ecpA|6e-07|15.6|64/458| RP:PFM:NREP 1 RP:PFM:REP 290->348|PF01609|6e-04|42.6|54/192|Transposase_11| HM:PFM:NREP 1 HM:PFM:REP 139->348|PF01609|1.7e-16|23.5|183/207|Transposase_11| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF01609|IPR002559| GO:PFM GO:0004803|"GO:transposase activity"|PF01609|IPR002559| GO:PFM GO:0006313|"GO:transposition, DNA-mediated"|PF01609|IPR002559| RP:SCP:NREP 1 RP:SCP:REP 287->406|1mm8A|2e-05|12.4|113/455|c.55.3.4| HM:SCP:REP 201->358|1musA_|4.1e-15|28.0|157/0|c.55.3.4|1/1|Ribonuclease H-like| OP:NHOMO 364 OP:NHOMOORG 54 OP:PATTERN -------------------------------------------------------------------- -------B-------------3-------------------15C----------------1---1--4-----------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-------------4-------5----2------------------------------------------------------------1-----------------------------------1-------5----6117--------4--------------------18---1--11--------1-5---F---3111114----11-------------------OMCIIOY--7------------------------------------------------------2----------------------------A--------m--89-------111--------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 64 STR:RPRED 11.8 SQ:SECSTR ##############################################################################################################################################################################################################################################################################################EEEEEEccccccHHHHHHHHHHHHTTHHHHHHHHHHTTTTcGG#GcccccHHHHHHHHHHHHHHH############################################################################################################################################################################################### DISOP:02AL 1-3, 159-167, 407-439, 456-461, 537-542| PSIPRED cccEEEEEEEEEEEEEEccccccccccHHHHHccHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccEEEEEEccEEEEcccHHHHHHHccccccccccccccEEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHcccEEEEEcccccccccEEEccccEEEEcccccEEEEEEEEEEEEccccEEEcEEEEEEEEcccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHccHHHHccccccccccccHHHccccccEEEEEEEEEcccccccccccccEEEEEEcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccc //