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Streptomyces avermitilis MA-4680 (save0)
Gene : BAC68335.1
DDBJ      :             putative LysR-family transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  393/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:303 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->143 3hhgG PDBj 2e-09 30.0 %
:RPS:PDB   1->215 1bi3A PDBj 4e-20 13.7 %
:RPS:SCOP  1->68 1b9mA1  a.4.5.8 * 1e-15 19.1 %
:RPS:SCOP  104->218 1i69A  c.94.1.1 * 7e-13 21.1 %
:HMM:SCOP  1->112 1b9mA1 a.4.5.8 * 7.7e-25 41.0 %
:HMM:SCOP  82->305 1uthA_ c.94.1.1 * 8.2e-37 31.5 %
:RPS:PFM   3->61 PF00126 * HTH_1 1e-12 55.9 %
:RPS:PFM   110->215 PF03466 * LysR_substrate 6e-08 39.8 %
:HMM:PFM   88->293 PF03466 * LysR_substrate 7.7e-38 31.2 205/209  
:HMM:PFM   3->62 PF00126 * HTH_1 2e-24 53.3 60/60  
:BLT:SWISS 1->202 BUDR_KLETE 4e-16 29.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68335.1 GT:GENE BAC68335.1 GT:PRODUCT putative LysR-family transcriptional regulator GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 777216..778127 GB:FROM 777216 GB:TO 778127 GB:DIRECTION + GB:PRODUCT putative LysR-family transcriptional regulator GB:NOTE PF03466: LysR substrate binding domain GB:PROTEIN_ID BAC68335.1 LENGTH 303 SQ:AASEQ MTLEDLRVFVAVCKAGSLSAAARDLDCTQSAVSQHVKRLERETGVSLVERQPRGVLPTHAGRVLCDAASDSIAGLDLALRRLGDLVNGDSGSVRVTTGGTTVRHFMSEAIVAFRQRYPKVSLEFQTETSSRNCFDALTAGNLDLAWVTIAGPVRGIEQRPVVALPWVLAVRADDPLAGRPCVNTAELTDISLIRLPHNSTSGARLDAAFAELGVRSSSDTSVADWDTALLLAELGLGHAVVPVLPGWQVPGDGPLRLVPIPDLPPLPVGWAVRRWDALTPLARVFADTVARSCKEKTANTRPK GT:EXON 1|1-303:0| BL:SWS:NREP 1 BL:SWS:REP 1->202|BUDR_KLETE|4e-16|29.9|201/290| SEG 73->85|agldlalrrlgdl| SEG 90->103|sgsvrvttggttvr| SEG 228->237|alllaelglg| SEG 254->267|plrlvpipdlpplp| BL:PDB:NREP 1 BL:PDB:REP 4->143|3hhgG|2e-09|30.0|140/294| RP:PDB:NREP 1 RP:PDB:REP 1->215|1bi3A|4e-20|13.7|204/211| RP:PFM:NREP 2 RP:PFM:REP 3->61|PF00126|1e-12|55.9|59/60|HTH_1| RP:PFM:REP 110->215|PF03466|6e-08|39.8|103/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 88->293|PF03466|7.7e-38|31.2|205/209|LysR_substrate| HM:PFM:REP 3->62|PF00126|2e-24|53.3|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->68|1b9mA1|1e-15|19.1|68/122|a.4.5.8| RP:SCP:REP 104->218|1i69A|7e-13|21.1|114/206|c.94.1.1| HM:SCP:REP 1->112|1b9mA1|7.7e-25|41.0|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 82->305|1uthA_|8.2e-37|31.5|216/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 973 OP:NHOMOORG 395 OP:PATTERN -------------------------------------------------------------------- -2--21----11--1-------1111----------3544-4--1--12---111--1------2-43332---------1-1------------------------1----------------------------33311---2-1112121---11111-113112--11--1111-111111------112------1---1-1111---21---11-1---------55-------------------------------------------------------------------------------------------1---11111111111------------3----------1---1---------1----1--1211231-1-----22322221321-3212273213--3111125234223--1--24-1122--1-1111113121111--------------------------------1---2AA64CBB9CB244447788444413C576896--56413443A242811--11-21-----------121-1-1-----1122--111-1121-11-121-1-------------------------112----11--123111111121111211111---11-1------14132134554443444-544454345354433443256511-1-2-2122222222221213433334--122222222222-------------11124111-11---------3323312--13133434344254535555-------------1----------2523234111-------------------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------2----------------1----------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 302 STR:RPRED 99.7 SQ:SECSTR HHHHHHHHHHHHTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEcTTccEEEcHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHTTTccHHHHHHHHHHcccccccTTcccccTTHHHHTcccEEHHHHcccccEEEEEEEccGGGccccTHHHHHHHTTccTTcEEEEccccEEEETTEEETEEEEEccHHHHHHcEEEcEEEEEEccHHHHHHHHHHTccEEEEEGGGccTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTccHHHHHHHH# DISOP:02AL 84-86, 294-303| PSIPRED ccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEcccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHcccEEEEEEEccccccccEEEEEEcccEEEEEcccccccccccccHHHHccccEEEEcccccHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHccHHHHHHHHHHHHHHccccEEEEEcccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHcccccccc //