[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Streptomyces avermitilis MA-4680 (save0)
Gene : BAC68363.1
DDBJ      :             putative AraC-family transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  301/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.1b.82.1
:263 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   169->257 2k9sA PDBj 8e-06 28.1 %
:RPS:PDB   32->150 2araA PDBj 5e-12 12.2 %
:RPS:PDB   169->259 1bl0A PDBj 1e-17 19.8 %
:RPS:SCOP  29->212 1ey2A  b.82.1.4 * 1e-16 11.4 %
:RPS:SCOP  216->259 1bl0A2  a.4.1.8 * 2e-08 20.5 %
:HMM:SCOP  3->184 1juhA_ b.82.1.5 * 1.5e-17 23.2 %
:HMM:SCOP  161->214 1d5yA1 a.4.1.8 * 5.7e-09 25.9 %
:HMM:SCOP  215->263 1d5yA2 a.4.1.8 * 5e-10 38.8 %
:RPS:PFM   31->118 PF02311 * AraC_binding 2e-09 38.6 %
:HMM:PFM   172->213 PF00165 * HTH_AraC 6e-09 28.6 42/42  
:HMM:PFM   225->257 PF00165 * HTH_AraC 8.3e-07 28.1 32/42  
:HMM:PFM   31->94 PF07883 * Cupin_2 2.1e-09 25.0 64/71  
:BLT:SWISS 42->258 YEAM_ECOLI 6e-24 35.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68363.1 GT:GENE BAC68363.1 GT:PRODUCT putative AraC-family transcriptional regulator GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 810866..811657 GB:FROM 810866 GB:TO 811657 GB:DIRECTION + GB:PRODUCT putative AraC-family transcriptional regulator GB:NOTE PF00165: Bacterial regulatory helix-turn-helix proteins, araC family GB:PROTEIN_ID BAC68363.1 LENGTH 263 SQ:AASEQ MVGAGHRVALPINCQTMTKIRHEPVAPTRTQRLAPGAAIDPHRHDDHQIVYAGRGVLAVTTSAGSWVAPGTRAIWVPAGTVHAHQAHGELELHLVGLPADENPLALETPAVLAVSPLLRELIVAYTRTQDDHSPERARLRAVLLDQLRASPQQPLHLPTPTAPLLQTLCDILRADPADSRTLTELGREIGASDRTLSRLFRSELGMTFPQWRTQLRLHHALVLLADSTPVTAVAHLCGWSSASAFIDAFRRTFGHTPGARPRD GT:EXON 1|1-263:0| BL:SWS:NREP 1 BL:SWS:REP 42->258|YEAM_ECOLI|6e-24|35.7|213/273| SEG 151->168|pqqplhlptptapllqtl| BL:PDB:NREP 1 BL:PDB:REP 169->257|2k9sA|8e-06|28.1|89/107| RP:PDB:NREP 2 RP:PDB:REP 32->150|2araA|5e-12|12.2|115/149| RP:PDB:REP 169->259|1bl0A|1e-17|19.8|91/116| RP:PFM:NREP 1 RP:PFM:REP 31->118|PF02311|2e-09|38.6|88/130|AraC_binding| HM:PFM:NREP 3 HM:PFM:REP 172->213|PF00165|6e-09|28.6|42/42|HTH_AraC| HM:PFM:REP 225->257|PF00165|8.3e-07|28.1|32/42|HTH_AraC| HM:PFM:REP 31->94|PF07883|2.1e-09|25.0|64/71|Cupin_2| GO:PFM:NREP 1 GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02311|IPR003313| RP:SCP:NREP 2 RP:SCP:REP 29->212|1ey2A|1e-16|11.4|184/419|b.82.1.4| RP:SCP:REP 216->259|1bl0A2|2e-08|20.5|44/62|a.4.1.8| HM:SCP:REP 3->184|1juhA_|1.5e-17|23.2|177/0|b.82.1.5|1/1|RmlC-like cupins| HM:SCP:REP 161->214|1d5yA1|5.7e-09|25.9|54/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 215->263|1d5yA2|5e-10|38.8|49/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 647 OP:NHOMOORG 303 OP:PATTERN -------------------------------------------------------------------- --1-1-12111---21111-1-----11111------91----4--1-1-----------------1135-------------------------------1---------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------1--1--1------1211--146--211-11111--1---2--3-122--3331121-1-111--1--211-22---11111111------16--------------------------------1--3343549A9983221133422222129673222--222-121161113-14--1-25-1111111---111--------11---1------11------21-----------------------------21----2-11-1455511143241211322-------------2-2112111121222-1-111112211112111111-575-31121111--1---11111151-11111--111111111111---------------415---------------2222221---2-BBAB3A66143422-11211111111-3221222222313368221211-1--------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 254 STR:RPRED 96.6 SQ:SECSTR #ccccccTTTEEcGGGcHHHHHHTcEEEEEEcTTcccEEETTccccEEEEEEEEEcEEEEETTEEccccTTcEEEEcTTccEEEEEcTTccEEEEEEEEEcccTGGGGGGGGcGccccccTTcEEccccTTTHHHHHHHHHHHHHHHTcccTTHHHHHHHHHHH####HHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHH#### DISOP:02AL 1-5, 150-162, 259-263| PSIPRED cccccccccccccHHHccccccccEEEEHHHHHcccccccccccccEEEEEEEccEEEEEEccEEEEEccccEEEEccccEEEEEEccccEEEEEEcccHHHHHHHHcccEEEcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHccc //