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Streptomyces avermitilis MA-4680 (save0)
Gene : BAC68481.1
DDBJ      :             putative LysR-family transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  604/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:304 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->147 1iz1B PDBj 5e-09 37.3 %
:RPS:PDB   1->162 1c0wA PDBj 3e-18 13.5 %
:RPS:SCOP  5->133 1fokA2  a.4.5.12 * 2e-16 8.5 %
:RPS:SCOP  107->181 1o63A  c.94.1.1 * 6e-06 13.3 %
:HMM:SCOP  3->91 1ixcA1 a.4.5.37 * 8.5e-25 46.1 %
:HMM:SCOP  84->301 1uthA_ c.94.1.1 * 3.3e-24 29.2 %
:RPS:PFM   6->64 PF00126 * HTH_1 2e-10 61.0 %
:HMM:PFM   91->299 PF03466 * LysR_substrate 1.2e-35 29.9 201/209  
:HMM:PFM   6->63 PF00126 * HTH_1 4.7e-26 60.3 58/60  
:BLT:SWISS 1->179 YNFL_ECOLI 2e-20 37.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68481.1 GT:GENE BAC68481.1 GT:PRODUCT putative LysR-family transcriptional regulator GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 921494..922408 GB:FROM 921494 GB:TO 922408 GB:DIRECTION + GB:PRODUCT putative LysR-family transcriptional regulator GB:NOTE PF03466: LysR substrate binding domain GB:PROTEIN_ID BAC68481.1 LENGTH 304 SQ:AASEQ MNIHGRDLRYFTSVAEELSFTRAAERLFISQPALSKQIRMLEKQLGAVLFERDRRTVRLTAVGKALLPHAREVLAAWQAAEAAVEEVKTAERCTLVIGMSTSPGRGLLPALRTRLVSRHPDAQPVLRQVNWADPSAGLADGSSDVAFVWLPLPDDDRYQYAVVAREPRLVALPDGHPLAARAASDPEGKVDFTDLLEEPFLALPPEAGPLRDYWLALDARDGRQPRIGGVVASAEETHEAVASGQGVALLATGNASLVVRDEVIAVPVRGISPSQLAVAAGRDDTRPLVLAYLAAAREVGATTC GT:EXON 1|1-304:0| BL:SWS:NREP 1 BL:SWS:REP 1->179|YNFL_ECOLI|2e-20|37.3|177/297| SEG 70->91|arevlaawqaaeaaveevktae| SEG 195->210|lleepflalppeagpl| BL:PDB:NREP 1 BL:PDB:REP 6->147|1iz1B|5e-09|37.3|142/294| RP:PDB:NREP 1 RP:PDB:REP 1->162|1c0wA|3e-18|13.5|155/173| RP:PFM:NREP 1 RP:PFM:REP 6->64|PF00126|2e-10|61.0|59/60|HTH_1| HM:PFM:NREP 2 HM:PFM:REP 91->299|PF03466|1.2e-35|29.9|201/209|LysR_substrate| HM:PFM:REP 6->63|PF00126|4.7e-26|60.3|58/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 5->133|1fokA2|2e-16|8.5|129/135|a.4.5.12| RP:SCP:REP 107->181|1o63A|6e-06|13.3|75/203|c.94.1.1| HM:SCP:REP 3->91|1ixcA1|8.5e-25|46.1|89/0|a.4.5.37|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 84->301|1uthA_|3.3e-24|29.2|209/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 3158 OP:NHOMOORG 610 OP:PATTERN -------------------------------------------------------------------- 253-F1134442-1734----5111D-----165559CEG-83721-2-1--3532-3--323-A5KAE72--------13551-1111111-1------14-111-113---------------1---1----1-23312---21322422222111111112216414111111111111112111---4185555555514455642198675451116121233322EG1--------------1---1-2-1111-21122111-112--11-----------------------------------------------11852222222-2--311---------2231169111--1221-----12-2311------128A83333633222322223237-23433B49693-F888235CG6678B21244B12243454344444462232143------------------------------167-15MFDMOTTUUPECBBBPOPWDCDDAHUNNFLIL-1FB878896L6D3O836542217522332132324471---122-125224-2--33511-541445-2--1------------------1---769561243142522211-12311-3121-11---1336------75983958766866677-7778856788768777777DFE684749786999998979769B65455554-544455435555--1111111111113468111111-2232-2238887946132F4IJJJEJHM8GIII6ABE---------23333444442323376889883332222--3---------------1--------------------------------------41 -------------1------------------------------------------------------------------------------------------------------------------------------------------------4----1-----------1------------4-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 296 STR:RPRED 97.4 SQ:SECSTR HHHHHHHHHHHHHHTccccHHHHHHHHTccHHHHHHHHHHHHHTTcccEEEcTTccEEEcHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHTTTccHHHHHHHHHHHHHHcccccccTTccccccHHHHTcccEEcHHHHHcHHHHHHHHHTcccGGGHGGGcTccEEEEEEEEEEEEcccEEEEE###HTcEEEEEEcTTccEEEEEEEGGGcTTccTTcEEEEEEcGGGcEEEcccEEEEEGGGccTTTcTTcEEEEccTTcccEEEEEETTccccHHHHHHHHHHcTT##### DISOP:02AL 86-88| PSIPRED ccccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEcccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEEEEEEEccccccccEEEEEEEcccEEEEEcccccccccccccccccccHHHHHcccEEEEcccccHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHccHHHHHHHHHHHHHccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHHHHHcccc //