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Streptomyces avermitilis MA-4680 (save0)
Gene : BAC68611.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  113/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:350 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   7->65 2acjC PDBj 9e-09 27.6 %
:RPS:SCOP  3->65 1o57A1  a.4.5.40 * 2e-09 16.1 %
:HMM:SCOP  2->64 1biaA1 a.4.5.1 * 5.9e-09 33.3 %
:RPS:PFM   11->57 PF08279 * HTH_11 4e-05 44.7 %
:HMM:PFM   7->62 PF08279 * HTH_11 1.9e-12 48.1 54/55  
:BLT:SWISS 2->64 NSRR_GEOKA 3e-04 37.1 %
:BLT:SWISS 35->247 PAFB_MYCTU 3e-10 26.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68611.1 GT:GENE BAC68611.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1079174..1080226 GB:FROM 1079174 GB:TO 1080226 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:NOTE PF08279: HTH domain GB:PROTEIN_ID BAC68611.1 LENGTH 350 SQ:AASEQ MTTSTARVLALLEILQEGGIRTVPDLAARLNVDERTVRRYVGHLLDLGVPVDSVRGRYGGYRLAPGYRMPPLMLTDEEALAILLGLLAGQRAGLVTTSAAASESAAAKLRRVLPKALGRRLESLLETADFTARPRSGTAPEAGVLLDLAEAARHRRPVAISYTDRKGRGSDRTVLPYGLVAHSGRWYLTGADPAGGEVRTFRLDRIAAMTVQSGSFVVPAGFDPAATVLESLAHTPWTHEVSLRIQDSVQHIRSRLPADIATLSVIPATATPDDANLADTGDTSSDGPSALAAADERVGWVHVGIRAERLDWIPPVLAALDRPFVIERPAALRDLVRALARRLDEHATAG GT:EXON 1|1-350:0| BL:SWS:NREP 2 BL:SWS:REP 2->64|NSRR_GEOKA|3e-04|37.1|62/100| BL:SWS:REP 35->247|PAFB_MYCTU|3e-10|26.8|205/332| SEG 79->94|alaillgllagqragl| SEG 98->107|saaasesaaa| SEG 330->344|aalrdlvralarrld| RP:PDB:NREP 1 RP:PDB:REP 7->65|2acjC|9e-09|27.6|58/66| RP:PFM:NREP 1 RP:PFM:REP 11->57|PF08279|4e-05|44.7|47/52|HTH_11| HM:PFM:NREP 1 HM:PFM:REP 7->62|PF08279|1.9e-12|48.1|54/55|HTH_11| RP:SCP:NREP 1 RP:SCP:REP 3->65|1o57A1|2e-09|16.1|62/73|a.4.5.40| HM:SCP:REP 2->64|1biaA1|5.9e-09|33.3|63/0|a.4.5.1|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 146 OP:NHOMOORG 113 OP:PATTERN -------------------------------------------------------------------- -1--4----------------1---1------21112311-1-213-1--1------3---12-2-53421-------------------------1---------11------------------------------------2--------------------------------------1-1--------11111-22-2211-1-1----221---2---------11----------------------------------------------------------------------------------------------------------------------1---1---------1--------------------------------11111111111-------------------11--11------1-------1--------------------------------------------------------------------------------------11--------1-----------------------1--------------------1-----1-111------------------------------------11--1-----------1---------------------11----------------------------------1------1-111-111-111111---------------------------------------2---------------------------1111---------------------------------1-11---1-11----------------------------------------------------------------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 78 STR:RPRED 22.3 SQ:SECSTR HHcccHHHHHHHHHTcTTccccHHHHHHHHTccHHHHHHHHHHHHHTTccEEEEcccccEEEEccccccHHHHEGGGT################################################################################################################################################################################################################################################################################ DISOP:02AL 1-2, 347-350| PSIPRED cccHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHccccEEEEcccEEEEEEccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcEEEccccccccccHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEEEEEEEEccEEEEEEEEcccccEEEEEEEEEEEEEEcccEEcccccccHHHHHHHHHHccccccEEEEEEcccHHHHHHHccHHHHHHHHccccccccccccccccEEcccccEEEEEEcccccEEEEEEccccHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHccc //