[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Streptomyces avermitilis MA-4680 (save0)
Gene : BAC69187.1
DDBJ      :             putative LacI-family transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  550/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.35.1c.93.1
:345 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->338 1zvvA PDBj 3e-34 28.4 %
:RPS:PDB   17->338 1bdhA PDBj 8e-48 30.4 %
:RPS:SCOP  17->71 1bdhA1  a.35.1.5 * 4e-13 40.0 %
:RPS:SCOP  75->338 1rzrA2  c.93.1.1 * 1e-44 23.1 %
:HMM:SCOP  14->72 1efaA1 a.35.1.5 * 2.2e-16 50.8 %
:HMM:SCOP  74->338 1dbqA_ c.93.1.1 * 1.4e-64 39.2 %
:RPS:PFM   17->62 PF00356 * LacI 9e-07 54.3 %
:RPS:PFM   73->313 PF00532 * Peripla_BP_1 6e-25 36.2 %
:HMM:PFM   74->318 PF00532 * Peripla_BP_1 3.7e-25 24.7 243/279  
:HMM:PFM   17->62 PF00356 * LacI 1.1e-16 45.7 46/46  
:BLT:SWISS 17->338 CCPA_BACME 9e-34 28.4 %
:PROS 18->36|PS00356|HTH_LACI_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC69187.1 GT:GENE BAC69187.1 GT:PRODUCT putative LacI-family transcriptional regulator GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1821069..1822106 GB:FROM 1821069 GB:TO 1822106 GB:DIRECTION + GB:PRODUCT putative LacI-family transcriptional regulator GB:NOTE PF00532: Periplasmic binding proteins and sugar binding domain of the LacI family GB:PROTEIN_ID BAC69187.1 LENGTH 345 SQ:AASEQ MAETARRAENRYGNRPTMKDVAARAGVGLKTVSRVVNGEPGVTPDTERRVQEAIDALGFRRNDSARVLRKGSTASIGLVLEDLADPFYGPLSRAVEEVARAHGALLINGSSAEDPDREQELALALCARRVDGLVVIPAGDDHRYLEPEIKAGVATVFVDRPAGRIDADAVLSDSFGGARAGVAHLIGHGHRRIGFIGDMPRIHTAVERLRGYRAAMEDAGIPVEDSWMSLGVTDPERVRRAAEKMLSGPSPVTAVFAGNNRVTVTVVRVLAEHGRRIALVGFDDFELADLLQPGVTVVAQDAAALGRTAAERLFRQLDGSLVTPERIELPTRLITRGSGELPPAD GT:EXON 1|1-345:0| BL:SWS:NREP 1 BL:SWS:REP 17->338|CCPA_BACME|9e-34|28.4|320/332| PROS 18->36|PS00356|HTH_LACI_1|PDOC00366| SEG 186->197|ighghrrigfig| SEG 259->269|nnrvtvtvvrv| BL:PDB:NREP 1 BL:PDB:REP 17->338|1zvvA|3e-34|28.4|320/332| RP:PDB:NREP 1 RP:PDB:REP 17->338|1bdhA|8e-48|30.4|322/338| RP:PFM:NREP 2 RP:PFM:REP 17->62|PF00356|9e-07|54.3|46/46|LacI| RP:PFM:REP 73->313|PF00532|6e-25|36.2|240/261|Peripla_BP_1| HM:PFM:NREP 2 HM:PFM:REP 74->318|PF00532|3.7e-25|24.7|243/279|Peripla_BP_1| HM:PFM:REP 17->62|PF00356|1.1e-16|45.7|46/46|LacI| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00356|IPR000843| GO:PFM GO:0005622|"GO:intracellular"|PF00356|IPR000843| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00356|IPR000843| RP:SCP:NREP 2 RP:SCP:REP 17->71|1bdhA1|4e-13|40.0|55/56|a.35.1.5| RP:SCP:REP 75->338|1rzrA2|1e-44|23.1|264/272|c.93.1.1| HM:SCP:REP 14->72|1efaA1|2.2e-16|50.8|59/59|a.35.1.5|1/1|lambda repressor-like DNA-binding domains| HM:SCP:REP 74->338|1dbqA_|1.4e-64|39.2|265/282|c.93.1.1|1/1|Periplasmic binding protein-like I| OP:NHOMO 3747 OP:NHOMOORG 554 OP:PATTERN -------------------------------------------------------------------- 7463h-126681-------------B------3111237D6-2DJYM1DEC2QOP-15--7469P5JMPH6B7778DD3---4-----1111-1-----1-7-319-749--------------------------77854---9----------------------1-1-------------47222AA-B68AAA9A88C7A9A889DC88979A857D16568999994M43333333333333321143735-54181-1554455433344333676565643354455455555554544555455543322244457416B222222262732114567B43112-3--------H1-489971-2--2ECC3-----2-433--------44343444349---2--3124B--IDDBJFGSQOLH657134A56445643--------333-1--1------------------------------2825115523689A8652111779G43433688A3544--6658-51145624B-------3----------------1----1--3------------------8-----------------------------AAB4-77-7385454633212312223115-------------HGFE7EEBCCABCDCCA-CB8CDCACCCCCBDD9CDAJKKDD7779B889A9999889878N99BBBAB7-FBBCBABACCCC---------------579444537133333226----------5644443338133351656----------A89899999B99DC7799999887-1-1--------------------2-------------------------5566238544--- -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------2--------------1--------4---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 345 STR:RPRED 100.0 SQ:SECSTR EEEEcccccTTcTTcccHHHHHHHHTccHHHHHHHHHTcccccHHHHHHHHHHHHHHTccccHHHHHHHHTcccEEEEEEcccccHHHHHHHHHHHHHHHHTTcEEEEEEcTTcHHHHHHHHHHHHHTTccEEEEcccccHHHHHHHHTTTTccEEEccccccccccEEEEccHHHHHHHHHHHHHHTTcccEEEEcccTTcHHHHHHHHHHHHHHHHTTccccGGGcccccccHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHHTTccTEEEEEEccTTGGGccccccEEEccHHHHHHHHHHHHHHHHHTccccccEEEcccEEEcccccccTTcc DISOP:02AL 1-18, 66-69, 341-345| PSIPRED cccccccccccccccccHHHHHHHHcccHHHEEHEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHcccEEEEEEcccccccccEEEEcHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHccccEEEEEEcccHHHHHccccEEEEEccHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEccccccccc //