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Streptomyces avermitilis MA-4680 (save0)
Gene : BAC69227.1
DDBJ      :             putative LysR-family transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  645/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:312 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->295 3fzvB PDBj 1e-12 24.2 %
:RPS:PDB   3->160 1c0wA PDBj 2e-18 13.2 %
:RPS:SCOP  2->109 1b9mA1  a.4.5.8 * 2e-16 13.9 %
:RPS:SCOP  94->294 1i69A  c.94.1.1 * 1e-21 20.0 %
:HMM:SCOP  4->119 1b9mA1 a.4.5.8 * 4.4e-22 30.3 %
:HMM:SCOP  94->301 1uthA_ c.94.1.1 * 9.8e-36 30.4 %
:RPS:PFM   10->68 PF00126 * HTH_1 1e-07 50.8 %
:RPS:PFM   107->294 PF03466 * LysR_substrate 7e-09 27.7 %
:HMM:PFM   96->300 PF03466 * LysR_substrate 1.4e-46 33.7 205/209  
:HMM:PFM   11->69 PF00126 * HTH_1 2e-20 52.5 59/60  
:BLT:SWISS 8->292 YYBE_BACSU 6e-43 37.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC69227.1 GT:GENE BAC69227.1 GT:PRODUCT putative LysR-family transcriptional regulator GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1859956..1860894 GB:FROM 1859956 GB:TO 1860894 GB:DIRECTION + GB:PRODUCT putative LysR-family transcriptional regulator GB:NOTE PF03466: LysR substrate binding domain GB:PROTEIN_ID BAC69227.1 LENGTH 312 SQ:AASEQ MRRKNARMDLQVLRSFQAVAEGTTVTDAAADARITQPALSRALNRLEDEVGAELFQRVGRVLRLTPAGRVFKEYVDAVLDSYDRGRRAVAEIVDPDAGAVSLAFLHTLGTWLVPRLVTDFRQAFPQARFELHQDGEIGLTRHLLDATADLIITSSEPAHPLITWRRLLVEPLRLAVPARHRLARRRRARLAEVAEEPFILLKPGYGLRGISETLCLEAGFTPLVGFEGEEVETLRGLVAAGLGVSLIPSSPDSTTPPDSPIRYLEITDVHGARDIGIAWLSSRALPPITRRFLDHALKSAAAPAASQATSRA GT:EXON 1|1-312:0| BL:SWS:NREP 1 BL:SWS:REP 8->292|YYBE_BACSU|6e-43|37.4|281/292| SEG 171->197|plrlavparhrlarrrrarlaevaeep| SEG 248->260|psspdsttppdsp| SEG 296->311|alksaaapaasqatsr| BL:PDB:NREP 1 BL:PDB:REP 10->295|3fzvB|1e-12|24.2|273/284| RP:PDB:NREP 1 RP:PDB:REP 3->160|1c0wA|2e-18|13.2|152/173| RP:PFM:NREP 2 RP:PFM:REP 10->68|PF00126|1e-07|50.8|59/60|HTH_1| RP:PFM:REP 107->294|PF03466|7e-09|27.7|188/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 96->300|PF03466|1.4e-46|33.7|205/209|LysR_substrate| HM:PFM:REP 11->69|PF00126|2e-20|52.5|59/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 2->109|1b9mA1|2e-16|13.9|108/122|a.4.5.8| RP:SCP:REP 94->294|1i69A|1e-21|20.0|195/206|c.94.1.1| HM:SCP:REP 4->119|1b9mA1|4.4e-22|30.3|109/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 94->301|1uthA_|9.8e-36|30.4|207/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 3763 OP:NHOMOORG 654 OP:PATTERN -----------------------------------------------------1-------------- 354153141111-1732----3--17-----1123238AA-2461--212111122-2--212-13F6783-222--1-157211---2211--------14--12-1-2--------------------------13321---314225334232211111133386462111111111111121-----42B77777576266759621889E7662328121455443EU-1111111111111123324-3232241324441111122-------------------------------------------------1-22572222232324-322-11121--18332168432111422111--2-11-2221111144F9D3334846777767567669-6736596D89--E6699BAIMC89BE25175D33374693233333343345334-----------------------------1148128SKFLLSSWWQFBBBBQQUUEDEF9FYOXCONN12ECA6A99AN9H8OB666522295333342343438912212---125113-2-2424-21331343-3---------------------1---989733434274665555256877445573651--3335------9575479AA96A65699-A99A965989A69999A97BCB56347868687A997978768B57644474-533333233333--15111111111339AH2222321222213428888868121G4SRPTGLNJELNLM8GEJ---------245574445444468BB99A996873222--32----------------------------------------------------241 -------------2------------------------------------------------------------------------------------------------------------------------------------------------4-----------8--1-1---------1--3-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 295 STR:RPRED 94.6 SQ:SECSTR cEccHHHHHHHHHHHHHHHTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEcTTccccEEEcHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHTTTccHHHHHHEEEEHHHHcccccccTTccccccHHHHTcccEEcHHHHHcHHHHHTccccccGGGcEEEEEcTTcTTTTTccccHHHHHTcEEEEEcTTcTTHHHHHHHHHHHTcccEEEEEEccHHHHHHHHHHTccEEEEEEGGGccTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHH################# DISOP:02AL 1-5, 91-93, 301-312| PSIPRED cccccccccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEEEEEEcccccccccEEEEEEcccEEEEEcccccccccccccHHHHccccEEEEcccccHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEEEccccccHHHHHHHHHHHHHccccccccccccc //