[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Streptomyces avermitilis MA-4680 (save0)
Gene : BAC69380.1
DDBJ      :             putative transcription accessory protein
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  729/915 : Eukaryota  163/199 : Viruses  0/175   --->[See Alignment]
a.294.1a.60.2b.40.4c.55.3
:810 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->727 2oceA PDBj 0.0 62.7 %
:RPS:PDB   8->728 3bzkA PDBj e-134 58.9 %
:RPS:SCOP  8->324 2oceA3  a.294.1.1 * 3e-79 44.3 %
:RPS:SCOP  325->473 2oceA5  c.55.3.13 * 3e-37 72.5 %
:RPS:SCOP  474->563 2oceA1  a.60.2.6 * 5e-21 72.2 %
:RPS:SCOP  564->635 2oceA2  a.60.2.6 * 1e-28 62.5 %
:RPS:SCOP  637->730 2oceA4  b.40.4.5 * 1e-21 69.1 %
:HMM:SCOP  622->730 1wi5A_ b.40.4.5 * 2.2e-25 41.2 %
:RPS:PFM   13->205 PF09371 * Tex_N 4e-38 47.7 %
:RPS:PFM   652->722 PF00575 * S1 3e-14 50.7 %
:HMM:PFM   13->203 PF09371 * Tex_N 6.3e-78 60.2 191/193  
:HMM:PFM   653->724 PF00575 * S1 1.8e-21 45.8 72/74  
:HMM:PFM   498->546 PF03934 * GspK 4.1e-06 29.2 48/280  
:HMM:PFM   328->356 PF04312 * DUF460 0.0009 44.4 27/138  
:BLT:SWISS 13->728 YHGF_ECOLI 0.0 58.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC69380.1 GT:GENE BAC69380.1 GT:PRODUCT putative transcription accessory protein GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 2040961..2043393 GB:FROM 2040961 GB:TO 2043393 GB:DIRECTION + GB:PRODUCT putative transcription accessory protein GB:NOTE PF00575: S1 RNA binding domain GB:PROTEIN_ID BAC69380.1 LENGTH 810 SQ:AASEQ MTTPLVGSIEGRIAEELGVRERQVKAAVDLLDGGSTVPFIARYRKEATEMLDDAQLRTLEERLRYLRELEERRTAILESVREQGKLTAEVEAQIRGAETKARLEDIYLPFKPKRRTKAQIAREAGLEPLAEGLLGDPSVDPAAAAAAFVDADKGVADPQAALDGARSILTERFSEDADLIGELRERMWVRGRLAAKVRDGKEETGAKFADYFDFAEPFTELPSHRILAMLRGEKEDVLDLVLEPEEPSEQPGPSSYEGIVAHRFGIADRGRPGDKWLGDTVRWAWRTRILVHLGIDLRLRLRTAAEDEAVNVFAANLRDLLLAAPAGTRATLGLDPGFRTGVKVAVVDATGKVVATDVIHPHVPANKWDEALAKLARLAKEHAVELIAIGNGTASRETDKLAGELITRHPELQLTKVMVSEAGASVYSASAFASQELPGMDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDLSEVKLSRSLDAVVEDCVNGVGVDVNTASAPLLARVSGISSGLAENIVAHRDANGPFTSRTKLKGVARLGPKAYEQCAGFLRIRGGDDPLDASSVHPEAYPVVRRMVKSAGSEVASLIGNSGVLRSLRPDDFVDETFGLPTVSDILRELEKPGRDPRPAFKTATFKEGVEKISDLASGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKVKVLDIDIPRKRISLTLRLDDEAAASEGRQDQQGQGGGGRQQRGAGRPPQQRQQQQRQQQPQRQGRAGGGGGGGGSRQAPPPANSAMADALRRAGLVDPKRGKG GT:EXON 1|1-810:0| BL:SWS:NREP 1 BL:SWS:REP 13->728|YHGF_ECOLI|0.0|58.0|714/773| SEG 56->74|lrtleerlrylreleerrt| SEG 121->135|areagleplaegllg| SEG 139->157|vdpaaaaaafvdadkgvad| SEG 235->255|edvldlvlepeepseqpgpss| SEG 370->383|ealaklarlakeha| SEG 734->789|grqdqqgqggggrqqrgagrppqqrqqqqrqqqpqrqgraggggggggsrqapppa| BL:PDB:NREP 1 BL:PDB:REP 8->727|2oceA|0.0|62.7|719/729| RP:PDB:NREP 1 RP:PDB:REP 8->728|3bzkA|e-134|58.9|718/728| RP:PFM:NREP 2 RP:PFM:REP 13->205|PF09371|4e-38|47.7|193/193|Tex_N| RP:PFM:REP 652->722|PF00575|3e-14|50.7|71/74|S1| HM:PFM:NREP 4 HM:PFM:REP 13->203|PF09371|6.3e-78|60.2|191/193|Tex_N| HM:PFM:REP 653->724|PF00575|1.8e-21|45.8|72/74|S1| HM:PFM:REP 498->546|PF03934|4.1e-06|29.2|48/280|GspK| HM:PFM:REP 328->356|PF04312|0.0009|44.4|27/138|DUF460| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 5 RP:SCP:REP 8->324|2oceA3|3e-79|44.3|316/323|a.294.1.1| RP:SCP:REP 325->473|2oceA5|3e-37|72.5|149/149|c.55.3.13| RP:SCP:REP 474->563|2oceA1|5e-21|72.2|90/90|a.60.2.6| RP:SCP:REP 564->635|2oceA2|1e-28|62.5|72/73|a.60.2.6| RP:SCP:REP 637->730|2oceA4|1e-21|69.1|94/94|b.40.4.5| HM:SCP:REP 622->730|1wi5A_|2.2e-25|41.2|97/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1598 OP:NHOMOORG 899 OP:PATTERN --------------------------------11----11111------------------------- 211-222111121221111-12112211111222222222122211-1111-22211111221-12222211111111-12-------3222-2111--1111-1121-2-------1------1---------1-33333-1-41111111--1-----------2111---------------------132333332333333333333332332333233333333322222222222222222222122131331211122223223322-22222222222222222222222222222222222222122221112-2222333332232331331111132122122122232231-2331-1112-42221-----222223112222211221121222-22222222221-21132122222221111112222222222222222-1111211------------1---1111-11-1-----2212-111111111111111111111111111111111-1111112122112221111-1-32222222222222122222122111223-222222222111131-21-------------------1---1--2232122122222222222222222222221-2322-11-11122222222222222222-2222222222222222222222222222222222222222222222222222-2222222222221112111112222132222222222221222221112111222222222222222222222211111111112222222222222222333333333333--1---1111--------211------11--1----------1111-1111------1- --------211-11112111111111122111111-11111111111112111111122211--------1-1-11-------11111-1-121--111111-121-14-32313212212222422412C212232211212221221221111223223123262212B41311112A111--71141223131112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 723 STR:RPRED 89.3 SQ:SECSTR #######HHHHHHHHHHHTcTTccHHHHHHHHHTccHHHHHHHcHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHcccHHHHHHHHGGGccccccHHHHHHHTTTHHHHHHHHHcTTccHHHHHHTTccGGGTcccHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHcEEEEEEcTTcTTTTGGGGGGTEEEEEGGGccHHHHHHHHHHHHTTcEEEEEEccccccccHHHHHHHHHHHHTTccccccTTHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccEEEEEcccTTcEEEEEEcTTccEEEEEEEcccTTTccHHHHHHHHHHHHHHTTccEEEEEccTTHHHHHHHHHHHHHHcGGGccEEEEEccTTHHHHHTcHHHHHHcTTccHHHHHHHHHHHHHHcHHHHHTTccGGGccccTTTTTccHHHHHHHHHHHHHHHHHHHcEETTTccHHHHTTcTTccHHHHHHHHHHHHHHccccccGGGGGcTTccHHHHHHHHTTEEcTTcccGGGGccccGGGHHHHHHHHHHTTccHHHHTTcHHHHHHccGGGTccccccHHHHHHHHHHHHcTTccccccccHHHHHHTcccGGGccTTcEEEEEEEEEETTEEEEEccccccEEEEGGGGcccccccHHHHccTTcEEEEEEEEEETTTTEEEEEccTTccHH################################################################################ DISOP:02AL 1-2, 431-440, 596-600, 723-810| PSIPRED ccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccEEEEEEEccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccEEEEEEEccccHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHccccccEEEEEEccccEEEEcccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccccEEEEEEEcccEEEHHHccHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccHHccHHHHHHHHccccHHHHccccccccccccHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEccEEEEEEccccEEEEEEEEccccccccHHHHcccccEEEEEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccccccccccc //