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Streptomyces avermitilis MA-4680 (save0)
Gene : abfA.1
DDBJ      :abfA         putative secreted alpha L-arabinofuranosidase II
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  68/915 : Eukaryota  35/199 : Viruses  0/175   --->[See Alignment]
b.42.8b.67.2
:481 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->349 3cpnA PDBj 1e-92 54.4 %
:BLT:PDB   346->462 1wd3A PDBj 4e-18 39.1 %
:RPS:PDB   37->347 3cpnA PDBj 2e-29 47.5 %
:RPS:PDB   356->481 2d43A PDBj 1e-31 37.1 %
:RPS:SCOP  46->351 1gydB  b.67.2.1 * 3e-21 18.2 %
:RPS:SCOP  335->481 1wd3A2  b.42.8.1 * 7e-40 33.3 %
:HMM:SCOP  37->347 1y7bA2 b.67.2.1 * 1.2e-67 33.9 %
:HMM:SCOP  334->481 1wd3A2 b.42.8.1 * 2.5e-51 53.8 %
:RPS:PFM   46->331 PF04616 * Glyco_hydro_43 2e-10 28.5 %
:RPS:PFM   359->478 PF05270 * AbfB 8e-28 51.3 %
:HMM:PFM   37->336 PF04616 * Glyco_hydro_43 2.6e-77 29.0 283/286  
:HMM:PFM   349->480 PF05270 * AbfB 5.5e-53 50.8 130/143  
:BLT:SWISS 37->315 ABF2_STRCX e-102 59.1 %
:BLT:SWISS 346->462 ABFB_ASPNG 2e-17 39.1 %
:TM
:REPEAT 3|341->382|387->430|435->478
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68753.1 GT:GENE abfA.1 GT:PRODUCT putative secreted alpha L-arabinofuranosidase II GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(1318574..1320019) GB:FROM 1318574 GB:TO 1320019 GB:DIRECTION - GB:GENE abfA GB:PRODUCT putative secreted alpha L-arabinofuranosidase II GB:NOTE PF04616: Glycosyl hydrolases family 43 GB:PROTEIN_ID BAC68753.1 LENGTH 481 SQ:AASEQ MRRLTVRLFTAVLAALALLTMGTPAHATAPASPSVTFTNPLAEKRADPHIFKHTDGYYYFTATVPEYDRIVLRRATTLQGLATAPETTIWTKHASGVMGAHIWAPEIHFIDGKWYVYFAAGSTSDVWAIRMYVLESGAANPLTGSWTEKGQIATPVSSFSLDATTFVVNGVRHLAWAQRNPAEDNNTSLFIAKMANPWTISGTPTEISQPTLSWETVGYKVNEGPAVIQHGGKVFLTYSASATDANYCLGMLSASASADLLNAASWTKSSQPVFKTSEATGQYGPGHNSFTVSEDGKSDILVYHDRNYKDISGDPLNDPNRRTRLQKVYWNADGTPNFGIPVADGVTPVRFSSYNYPDRYIRHWDFRARIEANVTNLADSQFRVVTGLAGSGTISLESANYPGYYLRHKNYEVWVEKNDGSSAFKNDASFSRRAGLADSADGIAFESYNYPGRYLRHYENLLRIQPVSTALDRQDATFYAE GT:EXON 1|1-481:0| BL:SWS:NREP 2 BL:SWS:REP 37->315|ABF2_STRCX|e-102|59.1|279/328| BL:SWS:REP 346->462|ABFB_ASPNG|2e-17|39.1|115/499| TM:NTM 2 TM:REGION 4->25| TM:REGION 111->133| NREPEAT 1 REPEAT 3|341->382|387->430|435->478| SEG 4->20|ltvrlftavlaalallt| SEG 23->34|tpahatapasps| SEG 252->265|lsasasadllnaas| BL:PDB:NREP 2 BL:PDB:REP 39->349|3cpnA|1e-92|54.4|305/312| BL:PDB:REP 346->462|1wd3A|4e-18|39.1|115/482| RP:PDB:NREP 2 RP:PDB:REP 37->347|3cpnA|2e-29|47.5|305/312| RP:PDB:REP 356->481|2d43A|1e-31|37.1|124/482| RP:PFM:NREP 2 RP:PFM:REP 46->331|PF04616|2e-10|28.5|260/271|Glyco_hydro_43| RP:PFM:REP 359->478|PF05270|8e-28|51.3|119/133|AbfB| HM:PFM:NREP 2 HM:PFM:REP 37->336|PF04616|2.6e-77|29.0|283/286|Glyco_hydro_43| HM:PFM:REP 349->480|PF05270|5.5e-53|50.8|130/143|AbfB| GO:PFM:NREP 4 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF04616|IPR006710| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF04616|IPR006710| GO:PFM GO:0046373|"GO:L-arabinose metabolic process"|PF05270|IPR007934| GO:PFM GO:0046556|"GO:alpha-N-arabinofuranosidase activity"|PF05270|IPR007934| RP:SCP:NREP 2 RP:SCP:REP 46->351|1gydB|3e-21|18.2|292/315|b.67.2.1| RP:SCP:REP 335->481|1wd3A2|7e-40|33.3|144/162|b.42.8.1| HM:SCP:REP 37->347|1y7bA2|1.2e-67|33.9|292/0|b.67.2.1|1/1|Arabinanase/levansucrase/invertase| HM:SCP:REP 334->481|1wd3A2|2.5e-51|53.8|145/0|b.42.8.1|1/1|AbfB domain| OP:NHOMO 192 OP:NHOMOORG 103 OP:PATTERN -------------------------------------------------------------------- ----1----------------------------------------11-2---------------5--421-2----22----------223----------1-1-2---2---------------------------------------1--1-----------1---------------------------1-----------------1---------------------7----------------------1----------------------------------------------------------------------1-----------1---------4-------------1------------1---------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------11-------------------------------1--3---------3---3333----3---------------11---11------------------------------1111----11111111111111111-----------------------------------------------------------------4----------------------------------------------------------------------------------------------------------------4- ---------------313522212121-------------------1122234344522111-----------------------------11-5-------------2----------------------------------------------------------------1-----------1---3--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 447 STR:RPRED 92.9 SQ:SECSTR ##################################ccccccccTTcEEEEEEcTTTccEEEEEEcTTccEEEEEEEccTGGGTTcccEEEEEcccccTcEcEEEEEEEEEETTEEEEEEEEEcccccccccEEEEEEccccTTccccEEEEEccccccccEEEEEEEEETTEEEEEEEEccTTcccccEEEEEEEETTEEcTccccEEEccccGGGccccccEEEEEEEEETTEEEEEEEEccccTTcEEEEEEETTccTTcGGGcEEcccccccccccTTTcEEEEEEEEEEcTTcccEEEEEEEEccccccccGGGccccEEEEEEcEEcTTccEEccccccccccccEEcccccTTcEEEEETTEEEEEccHHHHHHTcEEEEEccccTTcEEEEEcccTTEEEEEETTEEEEEEccccHHHHHHHcEEEEEcTTcccccEEEEEcccTTEEEEEETTEEEEEEcccccGGccTTHHHH DISOP:02AL 481-482| PSIPRED ccEEHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEccEEEEEEEEccccccEEEEEEccccccccccccEEEcccccccccccEEccEEEEEccEEEEEEEccccccccccEEEEEEEccccccccccccccEEcccccccccccEEEEEccEEEEEEccccccccccccEEEEEcccccccccccEEEEcccccccccccccccccEEEEEccEEEEEEEccccccccEEEEEEEccccccccccccccccccEEEEcccccccccccccEEEcccccEEEEEEccccccccccccccccccEEEEEEEEEcccccEEEEEccccccccccccccccccccccccccEEEEcccccccccccEEEEcccccccEEEEEEccccccEEEEccEEEEEEcccccHHHHccccEEEccccccccccEEEEEcccccEEEEEEccEEEEEcccccccccccEEEcc //