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Streptomyces avermitilis MA-4680 (save0)
Gene : abfB
DDBJ      :abfB         putative alpha L-arabinofuranosidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  13/915 : Eukaryota  21/199 : Viruses  0/175   --->[See Alignment]
b.42.8b.67.2
:469 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   369->463 1wd3A PDBj 3e-14 36.8 %
:RPS:PDB   89->295 2aezA PDBj 9e-09 13.0 %
:RPS:PDB   338->469 2d43A PDBj 6e-28 31.8 %
:RPS:SCOP  89->292 1uypA2  b.67.2.3 * 4e-12 9.8 %
:RPS:SCOP  333->469 1wd3A2  b.42.8.1 * 8e-34 30.7 %
:HMM:SCOP  88->285 1yifA2 b.67.2.1 * 1.1e-18 28.5 %
:HMM:SCOP  317->470 1wd3A2 b.42.8.1 * 6.7e-41 43.5 %
:RPS:PFM   340->464 PF05270 * AbfB 2e-24 51.6 %
:HMM:PFM   329->463 PF05270 * AbfB 2.3e-53 48.1 135/143  
:HMM:PFM   15->32 PF10518 * TAT_signal 6.6e-05 38.9 18/26  
:BLT:SWISS 369->463 ABF1_TRIRE 5e-14 37.9 %
:REPEAT 2|374->415|420->462
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68825.1 GT:GENE abfB GT:PRODUCT putative alpha L-arabinofuranosidase GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1398758..1400167 GB:FROM 1398758 GB:TO 1400167 GB:DIRECTION + GB:GENE abfB GB:PRODUCT putative alpha L-arabinofuranosidase GB:NOTE PF05270: Alpha-L-arabinofuranosidase B (ABFB) GB:PROTEIN_ID BAC68825.1 LENGTH 469 SQ:AASEQ MTVEDRGIPSDPPAPSRRGILRALLALPATALVWGEMPGAVGSAAAAAPSKGYATRYTIVPFLNSDDGVVNVYQSDDATDFRLLKATAYTPPSNRIRDASVFKHTNGYYYLTYTTHTWQDVSTTIGFARSSDRVNWTFLYDHTVPLTNLSRAWAPEWFVDSDGSVNVIVSCSATDNEWIFTPYLLKATNTGLTSWSAPVALSGIGANHIDTYIVKIGSTYHAFTKNETAKYIEYATATSLTGPYTISRTGDWAGWGSYREGPSVVRLDNGGWRIFFDGYGDGTYYFSDSYDTFATWTAPKALAGISGTARHFTVVKETVSGGVSLSTGVSRSFQSVNYPTRYWQEQSSLLNLPVVSSAASSAEKAASAFTVVAGLADAGGYSFRDAAGNYLRHYDYRARFDADDGTPTFAKDATYVARTGTAAGSVRFESYNYPGYYLRHYNYQLRVDPTDGTDQFRQDSSFNPVTAWA GT:EXON 1|1-469:0| BL:SWS:NREP 1 BL:SWS:REP 369->463|ABF1_TRIRE|5e-14|37.9|95/500| NREPEAT 1 REPEAT 2|374->415|420->462| SEG 21->32|lrallalpatal| SEG 38->50|pgavgsaaaaaps| SEG 319->332|vsggvslstgvsrs| SEG 356->368|ssaassaekaasa| BL:PDB:NREP 1 BL:PDB:REP 369->463|1wd3A|3e-14|36.8|95/482| RP:PDB:NREP 2 RP:PDB:REP 89->295|2aezA|9e-09|13.0|207/536| RP:PDB:REP 338->469|2d43A|6e-28|31.8|132/482| RP:PFM:NREP 1 RP:PFM:REP 340->464|PF05270|2e-24|51.6|124/133|AbfB| HM:PFM:NREP 2 HM:PFM:REP 329->463|PF05270|2.3e-53|48.1|135/143|AbfB| HM:PFM:REP 15->32|PF10518|6.6e-05|38.9|18/26|TAT_signal| GO:PFM:NREP 2 GO:PFM GO:0046373|"GO:L-arabinose metabolic process"|PF05270|IPR007934| GO:PFM GO:0046556|"GO:alpha-N-arabinofuranosidase activity"|PF05270|IPR007934| RP:SCP:NREP 2 RP:SCP:REP 89->292|1uypA2|4e-12|9.8|204/294|b.67.2.3| RP:SCP:REP 333->469|1wd3A2|8e-34|30.7|137/162|b.42.8.1| HM:SCP:REP 88->285|1yifA2|1.1e-18|28.5|186/0|b.67.2.1|1/1|Arabinanase/levansucrase/invertase| HM:SCP:REP 317->470|1wd3A2|6.7e-41|43.5|154/0|b.42.8.1|1/1|AbfB domain| OP:NHOMO 44 OP:NHOMOORG 34 OP:PATTERN -------------------------------------------------------------------- ----1--------------------------------111---2--------------------3--3-1-------------------------------------1--------------------------------------------1-----------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------3------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----------------1111111111-------------------11221-111---------------------------------------1-------------2--------------------------------------------------------------------------------1--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 343 STR:RPRED 73.1 SQ:SECSTR ########################################################################################cccccEEEEEEEEEEEETTEEEEEEEEEcccccccEEEEEEEcccccEEEEccccccGGGTTEEEEEEEEEETTTEEEEEEEEEcTTccEEEEEEEEccTTcTTcccEEEcTTcccccccTTccTTcEEcccccEEcTTccEEEEEEEEETTEEEEEEEEEccccccEEccccTTccccEEEEEEEEETTccccccTTcccccEEEETTcG######################################cTTcEEEEETTEEEEEcccTTccHHHHHHTcEEEEEccccTTcEEEcccTTEEEEEETTEEEEEEccccHHHHHHHcEEEEEcTTcccEEEEEcccTTEEEEEETTEEEEEEcccccGGGccTTHHHHTcEE DISOP:02AL 1-6, 9-10| PSIPRED ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEHEEEEccccccEEEEEEEccccccEEEccccccccccccccccEEEEEcccEEEEEEEEEccccccEEEEEEEccccEEEccccEEEcccccccEEEccccEEEccccEEEEEEcccccccccccEEEEEEcccccccEEEcEEEEccccccccEEEEEEccEEEEEEEccccEEEEEEccccccccEEEccccccccccccccccEEEEEcccEEEEEEEEccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEEEEEcccccccccEEEEEEEEcccccccccccccccccccEEEEccccccEEEEEEccccEEEEEccEEEEEcccccHHHHccccEEEEcccccccEEEEEEccccEEEEEEccEEEEEccccccHHHHHcccccccccc //