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Streptomyces avermitilis MA-4680 (save0)
Gene : cspD1
DDBJ      :cspD1        putative cold shock protein
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  702/915 : Eukaryota  78/199 : Viruses  1/175   --->[See Alignment]
b.40.4
:67 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->65 2i5mX PDBj 1e-20 65.6 %
:RPS:PDB   1->66 1c9oA PDBj 4e-22 61.5 %
:RPS:SCOP  1->66 1c9oA  b.40.4.5 * 2e-22 61.5 %
:HMM:SCOP  1->68 1h95A_ b.40.4.5 * 9.4e-27 58.8 %
:RPS:PFM   2->65 PF00313 * CSD 6e-20 71.9 %
:HMM:PFM   1->66 PF00313 * CSD 1.3e-36 65.2 66/67  
:BLT:SWISS 1->67 CSPF_STRCO 4e-30 79.1 %
:PROS 15->34|PS00352|COLD_SHOCK

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68536.1 GT:GENE cspD1 GT:PRODUCT putative cold shock protein GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(977461..977664) GB:FROM 977461 GB:TO 977664 GB:DIRECTION - GB:GENE cspD1 GB:PRODUCT putative cold shock protein GB:NOTE PF00313: 'Cold-shock' DNA-binding domain GB:PROTEIN_ID BAC68536.1 LENGTH 67 SQ:AASEQ MATGTVKWFNAEKGFGFIEQEGGGPDVFVHYSAINSAGFRELQEGQKVNFDVTQGPKGPQAENVTPA GT:EXON 1|1-67:0| BL:SWS:NREP 1 BL:SWS:REP 1->67|CSPF_STRCO|4e-30|79.1|67/67| PROS 15->34|PS00352|COLD_SHOCK|PDOC00304| BL:PDB:NREP 1 BL:PDB:REP 1->65|2i5mX|1e-20|65.6|64/66| RP:PDB:NREP 1 RP:PDB:REP 1->66|1c9oA|4e-22|61.5|65/66| RP:PFM:NREP 1 RP:PFM:REP 2->65|PF00313|6e-20|71.9|64/67|CSD| HM:PFM:NREP 1 HM:PFM:REP 1->66|PF00313|1.3e-36|65.2|66/67|CSD| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00313|IPR002059| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00313|IPR002059| RP:SCP:NREP 1 RP:SCP:REP 1->66|1c9oA|2e-22|61.5|65/66|b.40.4.5| HM:SCP:REP 1->68|1h95A_|9.4e-27|58.8|68/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 2593 OP:NHOMOORG 791 OP:PATTERN ------------------------31152123----------------------------------11 553-711333311123322-24223322222333337585333443221223354213--443154688621-111111-21311122-----------1-2111--431---------------11112122311-----------1-----------------------------------32122--2123666666666666676213333667211436233333365-33333333333332222236-213311-1-4311334222212561111111--------------1111111111111-11111111312222333323312-1445211-5-112-11--11241-342111112112-143341111143C55B544544633233333233-5547554649415555655997974433243565455333333333323333334------------11111111111111-1-22242155555666566533324468444434557586512444221--------3212323231111111224233-4526-----1----666334653555561551-------------------1---1114433564349B433333332332333333411-121311122245445737557755-66-568555577557755765645444556555544544455555575545555319858987687991122-----6665245452221222111111123422423334445555666656666555522222222224448444444444433333333332222115-----------------11-11----1--------1-------2311122212--- --11----------1-------1---------------------------1-------------------------------------------------1--12---5--5212122-111319C1715J3-51A-1-28--53124315-15-42-11223D22-121-2321--115211223144-4421----- ---------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------- STR:NPRED 67 STR:RPRED 100.0 SQ:SECSTR cEEEEEEEEETTTTEEEEEETTEEcEEEEEGGGccccccccccTTcEEEEEEEEETTEEEEEEEEEc DISOP:02AL 61-62| PSIPRED ccccEEEEEEccccEEEEEccccccEEEEEEEEEccccccccccccEEEEEEEccccccEEEEEEEc //